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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g01075 ATGGCCTTCATTTCTAAAGTTCACAACCTATCCGGCGACTTTCAAACTTCGACAACCACCCTACCAATGTGGTATGATGAAACTACTTCACCAACTGTCTTTGACAATTATGGGATCACAATGCCACTCGAATATGACATTACTTCGTGGAAGACTTCATTAATCCCTGAGAGATTTGGGGTTTCAGAGATGGTGGTTCCAACTTCGCCCGCTGGATTCAGTAGCATTCCTGTTGGAAATGATTATCAAAAGGTTGAAAACGACGAATATTTTTGTAGTAAGGGTGGCTACGGCACAAACTCATGTTGGACCTATCAAACTACAACTAATAATGGGGAAACCGAGAACCAGAAAACATGTAAAGAAATCGAAGAACCAACATTAAAGATTGGGAGGTATTCAGTGGAAGAAAGGAAAGACAAGATCATGAGGTATCTGAAGAAGAGAAACCAAAGGAACTTCAATAAGACCATTAAGTACGAATGCCGAAAGACATTAGCAGACAAGCGAATACGAGTTCGAGGGAGGTTTGCGAAGAACAATAATGATAATCATCATAATCATCATGACCATCACGATCATCAACCTTGTGAAGATCAAGCGCTGCCTAACTTCAATATTGCCGATAATCCTTTTGAGGAAGACATTCAACAGCTATACACTAACAATTTTCTGGTATATTTTCTACAATTACTTTTGTTCATGATATGTTTTTATTTAATTATGAAAACCAATCATTCTGAAAAATGTTATATGATGCATGTAGATGAAGCAGGATTATGA 783 37.8 MAFISKVHNLSGDFQTSTTTLPMWYDETTSPTVFDNYGITMPLEYDITSWKTSLIPERFGVSEMVVPTSPAGFSSIPVGNDYQKVENDEYFCSKGGYGTNSCWTYQTTTNNGETENQKTCKEIEEPTLKIGRYSVEERKDKIMRYLKKRNQRNFNKTIKYECRKTLADKRIRVRGRFAKNNNDNHHNHHDHHDHQPCEDQALPNFNIADNPFEEDIQQLYTNNFLVYFLQLLLFMICFYLIMKTNHSEKCYMMHVDEAGL 260
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g01075 260 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 104 192 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro)
Chmo14g01075 260 MobiDBLite consensus disorder prediction 179 198 - -
Chmo14g01075 260 MobiDBLite consensus disorder prediction 179 200 - -
Chmo14g01075 260 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Chmo14g01075 260 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g01075 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
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Event-related genes

Select Gene_1 Gene_2 Event_name
213753 Chmo14g01075 Chmo15g01020
216527 Chmo13g01177 Chmo14g01075
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:55324805 Chmo23g02358 Chmo-Chr23:167382325 dispersed
Chmo Chmo-Chr13:60767026 Chmo14g01075 Chmo-Chr14:55324805 wgd
Chmo Chmo-Chr14:55324805 Chmo15g01020 Chmo-Chr15:59183037 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chmo23g04847 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.804 5.07e-94 278.0
Chmo1g02250 ACH,CSH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.377 6.81e-133 382.0
Chmo17g01514 CSH 73 319 C2C2-CO-like Transcription Factor family AT3G02380 30.033 5.13e-25 101.0
Chmo17g01566 ACH,CSH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.493 1.21e-75 233.0
Chmo10g02818 CSH 185 270 C2C2-CO-like Transcription Factor family AT2G24790 39.535 8.32e-11 58.9
Chmo5g03386 CSH 1 322 C2C2-CO-like Transcription Factor family AT1G75540 41.84 9.53e-67 210.0
Chmo15g00337 ACH,CSH 1 206 C2C2-CO-like Transcription Factor family AT1G75540 52.857 3.57e-63 197.0
Chmo20g03527 ACH,CSH 235 333 C2C2-CO-like Transcription Factor family AT5G15850 37.0 9.13e-13 66.6
Chmo15g00670 CSH 1 298 C2C2-CO-like Transcription Factor family AT1G78600 50.0 4.10e-81 244.0
Chmo2g01864 CSH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.09 1.22e-95 282.0
Chmo19g03448 ACH,CSH 235 333 C2C2-CO-like Transcription Factor family AT5G15850 37.0 1.03e-12 66.2
Chmo24g04937 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.09 3.19e-93 276.0
Chmo24g04799 ACH,CSH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.589 2.69e-137 394.0
Chmo26g01632 CSH 8 401 C2C2-CO-like Transcription Factor family AT2G33500 38.462 3.72e-71 228.0
Chmo13g00791 ACH,CSH 1 298 C2C2-CO-like Transcription Factor family AT1G78600 50.0 2.51e-81 245.0
Chmo22g04896 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 51.125 2.61e-94 279.0
Chmo22g04834 ACH,CSH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.331 5.24e-137 393.0
Chmo15g00554 ACH,CSH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 52.184 4.22e-126 367.0
Chmo14g00680 ACH,CSH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.349 3.25e-128 372.0
Chmo22g00066 . 334 388 C2C2-CO-like Transcription Factor family AT5G24930 47.273 5.08e-11 62.0
Chmo13g00688 ACH,CSH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 52.67 1.07e-127 370.0
Chmo25g02313 ACH,CSH 4 97 C2C2-CO-like Transcription Factor family AT5G54470 55.789 5.27e-32 113.0
Chmo10g00345 . 1 45 C2C2-CO-like Transcription Factor family AT1G78600 82.222 1.47e-20 83.6
Chmo21g03642 ACH,CSH 233 333 C2C2-CO-like Transcription Factor family AT5G15850 37.864 9.04e-13 66.6
Chmo9g03314 ACH,CSH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 50.0 5.19e-117 342.0
Chmo4g03586 ACH,CSH 1 322 C2C2-CO-like Transcription Factor family AT1G75540 41.543 4.83e-67 211.0
Chmo26g01557 . 286 399 C2C2-CO-like Transcription Factor family AT1G68520 41.176 4.70e-21 91.7
Chmo9g04715 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 2.70e-10 58.5
Chmo3g02059 ACH,CSH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.09 1.22e-95 282.0
Chmo25g01412 CSH 286 399 C2C2-CO-like Transcription Factor family AT1G68520 41.176 3.88e-21 91.7
Chmo24g05156 CSH 1 110 C2C2-CO-like Transcription Factor family AT4G27310 52.727 2.33e-31 111.0
Chmo12g00823 CSH 8 328 C2C2-CO-like Transcription Factor family AT2G47890 46.175 6.34e-93 279.0
Chmo1g01274 ACH,CSH 7 355 C2C2-CO-like Transcription Factor family AT5G57660 47.467 2.52e-95 286.0
Chmo4g02584 ACH,CSH 1 347 C2C2-CO-like Transcription Factor family AT3G02380 52.073 3.95e-118 345.0
Chmo11g02931 CSH 185 270 C2C2-CO-like Transcription Factor family AT2G24790 39.535 6.86e-11 58.9
Chmo6g02924 CSH 1 322 C2C2-CO-like Transcription Factor family AT1G75540 42.262 2.93e-68 214.0
Chmo1g01322 ACH,CSH 285 399 C2C2-CO-like Transcription Factor family AT1G68520 45.69 7.48e-21 92.0
Chmo2g01123 ACH,CSH 285 399 C2C2-CO-like Transcription Factor family AT1G68520 44.828 1.31e-19 88.2
Chmo27g02297 ACH,CSH 3 105 C2C2-CO-like Transcription Factor family AT4G27310 51.923 1.57e-32 115.0
Chmo16g04115 CSH 1 183 C2C2-CO-like Transcription Factor family AT4G38960 60.094 2.63e-84 246.0
Chmo18g03810 ACH,CSH 4 166 C2C2-CO-like Transcription Factor family AT5G54470 41.566 1.03e-27 102.0
Chmo22g03240 ACH,CSH 239 327 C2C2-CO-like Transcription Factor family AT5G15850 36.458 2.13e-09 55.8
Chmo25g01512 CSH 8 401 C2C2-CO-like Transcription Factor family AT2G33500 38.739 2.23e-71 229.0
Chmo24g03149 ACH,CSH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 7.97e-10 57.0
Chmo24g03408 . 292 372 C2C2-CO-like Transcription Factor family AT3G07650 65.432 3.54e-31 113.0
Chmo14g00462 CSH 1 206 C2C2-CO-like Transcription Factor family AT1G75540 52.381 3.33e-64 199.0
Chmo14g00460 CSH 1 196 C2C2-CO-like Transcription Factor family AT1G75540 53.0 4.46e-63 196.0
Chmo10g00697 CSH 8 328 C2C2-CO-like Transcription Factor family AT2G47890 46.612 1.77e-93 281.0
Chmo23g05051 CSH 1 104 C2C2-CO-like Transcription Factor family AT4G27310 54.808 1.25e-31 112.0
Chmo23g04791 ACH,CSH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.331 1.88e-137 394.0
Chmo24g00196 . 334 388 C2C2-CO-like Transcription Factor family AT5G24930 47.273 4.70e-11 62.0
Chmo2g01919 . 1 224 C2C2-CO-like Transcription Factor family AT1G75540 49.16 2.88e-65 205.0
Chmo1g02090 ACH,CSH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.09 3.79e-96 283.0
Chmo1g02129 ACH 1 224 C2C2-CO-like Transcription Factor family AT1G75540 51.982 1.19e-63 202.0
Chmo13g00488 ACH,CSH 1 196 C2C2-CO-like Transcription Factor family AT1G75540 50.51 2.52e-60 188.0
Chmo13g00489 ACH,CSH 5 196 C2C2-CO-like Transcription Factor family AT1G75540 53.061 2.55e-61 192.0
Chmo18g03862 CSH 1 183 C2C2-CO-like Transcription Factor family AT4G38960 60.094 2.63e-84 246.0
Chmo14g02457 ACH,CSH 281 399 C2C2-CO-like Transcription Factor family AT1G68520 28.333 1.09e-06 48.5
Chmoscaffold_1493__frag0ment_3g00001 . 1 336 C2C2-CO-like Transcription Factor family AT3G02380 51.733 1.84e-111 328.0
Chmo27g01240 CSH 280 399 C2C2-CO-like Transcription Factor family AT1G68520 40.141 5.72e-22 94.4
Chmo23g02358 ACH,CSH 284 329 C2C2-CO-like Transcription Factor family AT5G57660 52.174 1.21e-10 60.1
Chmo11g00736 CSH 8 328 C2C2-CO-like Transcription Factor family AT2G47890 45.777 1.60e-93 281.0
Chmoscaffold_1692__frag0ment_2g00021 . 247 386 C2C2-CO-like Transcription Factor family AT5G24930 31.544 2.08e-12 66.2
Chmo16g01742 ACH,CSH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.21 9.45e-76 233.0
Chmo16g01697 CSH 69 319 C2C2-CO-like Transcription Factor family AT3G02380 27.687 6.78e-20 87.4
Chmo19g04453 CSH 4 272 C2C2-CO-like Transcription Factor family AT2G24790 46.23 1.78e-81 247.0
Chmo12g02958 CSH 185 270 C2C2-CO-like Transcription Factor family AT2G24790 39.535 7.42e-11 58.9
Chmo16g04060 ACH,CSH 4 166 C2C2-CO-like Transcription Factor family AT5G54470 43.452 2.19e-28 106.0
Chmo6g02073 ACH,CSH 1 347 C2C2-CO-like Transcription Factor family AT3G02380 52.073 3.95e-118 345.0
Chmo3g01315 ACH,CSH 285 399 C2C2-CO-like Transcription Factor family AT1G68520 45.69 7.41e-21 92.0
Chmo21g04565 . 4 272 C2C2-CO-like Transcription Factor family AT2G24790 45.981 1.73e-80 244.0
Chmo5g02451 ACH,CSH 1 347 C2C2-CO-like Transcription Factor family AT3G02380 52.332 1.67e-118 345.0
Chmo17g04499 CSH 5 221 C2C2-CO-like Transcription Factor family AT3G21150 29.06 1.99e-18 79.0
Chmo27g01473 CSH 102 401 C2C2-CO-like Transcription Factor family AT2G33500 32.682 3.61e-31 120.0
Chmo14g00782 ACH,CSH 1 210 C2C2-CO-like Transcription Factor family AT1G78600 53.774 1.52e-70 215.0
Chmo14g02330 ACH,CSH 9 355 C2C2-CO-like Transcription Factor family AT5G57660 42.623 1.28e-76 238.0
Chmo26g02421 ACH,CSH 4 170 C2C2-CO-like Transcription Factor family AT5G54470 44.048 3.40e-32 114.0
Chmo15g01020 CSH 338 388 C2C2-CO-like Transcription Factor family AT5G24930 49.02 4.50e-10 57.4
Chmo3g01249 ACH,CSH 7 355 C2C2-CO-like Transcription Factor family AT5G57660 47.34 7.52e-94 283.0
Chmo17g04315 CSH 1 183 C2C2-CO-like Transcription Factor family AT4G38960 60.094 2.63e-84 246.0
Chmo2g00001 . 7 355 C2C2-CO-like Transcription Factor family AT5G57660 47.439 3.72e-94 283.0
Chmo17g01491 . 73 319 C2C2-CO-like Transcription Factor family AT3G02380 30.033 5.03e-25 101.0
Chmo20g04435 CSH 4 272 C2C2-CO-like Transcription Factor family AT2G24790 45.955 1.54e-81 247.0
Chmoscaffold_5569g00001 . 7 355 C2C2-CO-like Transcription Factor family AT5G57660 47.619 5.32e-94 283.0
Chmoscaffold_5099_frag0ment_1g00004 . 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 2.54e-10 58.5
Chmo7g04736 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 2.54e-10 58.5
Chmo2g01073 ACH,CSH 7 355 C2C2-CO-like Transcription Factor family AT5G57660 47.619 5.32e-94 283.0
Chmo7g03172 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 50.0 3.74e-117 342.0
Chmo17g04251 ACH,CSH 4 166 C2C2-CO-like Transcription Factor family AT5G54470 42.857 6.35e-28 105.0
Chmo3g02375 ACH,CSH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.377 6.81e-133 382.0
Chmo17g01489 . 298 328 C2C2-CO-like Transcription Factor family AT5G15840 54.839 2.19e-06 43.1
Chmo8g01370 CSH 315 386 C2C2-CO-like Transcription Factor family AT5G24930 45.205 5.46e-12 65.1
Chmo9g01352 CSH 315 386 C2C2-CO-like Transcription Factor family AT5G24930 45.205 5.49e-12 65.1
Chmo5g01199 ACH,CSH 286 331 C2C2-CO-like Transcription Factor family AT5G15850 52.174 1.58e-09 55.5
Chmoscaffold_8970g00001 . 60 355 C2C2-CO-like Transcription Factor family AT5G57660 45.963 7.57e-68 214.0
Chmo17g03216 . 10 303 C2C2-CO-like Transcription Factor family AT1G68190 36.599 2.71e-59 194.0
Chmo4g01278 ACH,CSH 286 331 C2C2-CO-like Transcription Factor family AT5G15850 52.174 1.73e-09 55.5
Chmo24g02243 ACH,CSH 284 329 C2C2-CO-like Transcription Factor family AT5G57660 52.174 1.21e-10 60.1
Chmo24g02803 . 180 355 C2C2-CO-like Transcription Factor family AT3G07650 53.889 7.93e-56 180.0
Chmo24g02804 . 1 86 C2C2-CO-like Transcription Factor family AT5G48250 74.419 7.91e-42 138.0
Chmo16g04301 CSH 5 221 C2C2-CO-like Transcription Factor family AT3G21150 29.06 2.32e-18 79.0
Chmo7g04742 ACH 279 331 C2C2-CO-like Transcription Factor family AT5G57660 47.17 4.47e-12 59.3
Chmo23g00038 . 334 388 C2C2-CO-like Transcription Factor family AT5G24930 47.273 7.30e-11 61.6
Chmo2g02014 ACH,CSH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.377 6.81e-133 382.0
Chmo18g04128 CSH 5 221 C2C2-CO-like Transcription Factor family AT3G21150 29.06 2.32e-18 79.0
Chmo13g02443 ACH,CSH 9 355 C2C2-CO-like Transcription Factor family AT5G57660 42.35 1.17e-75 235.0
Chmo14g01075 CSH 338 388 C2C2-CO-like Transcription Factor family AT5G24930 49.02 4.50e-10 57.4
Chmo8g01068 . 91 199 C2C2-CO-like Transcription Factor family AT1G78600 34.862 1.08e-11 57.8
Chmo17g01579 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.21 6.19e-76 234.0
Chmo2g05202 . 68 157 C2C2-CO-like Transcription Factor family AT5G24930 64.444 2.84e-30 110.0
Chmo17g01585 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.493 1.21e-75 233.0
Chmo13g01177 CSH 338 385 C2C2-CO-like Transcription Factor family AT5G24930 50.0 2.42e-09 55.1
Chmo22g05128 CSH 4 184 C2C2-CO-like Transcription Factor family AT5G54470 40.625 3.50e-30 108.0
Chmo7g03152 ACH,CSH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 50.0 2.50e-117 343.0
Chmo17g01490 . 73 319 C2C2-CO-like Transcription Factor family AT3G02380 30.033 5.03e-25 101.0
Chmo7g04755 . 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 2.42e-10 58.5
Chmo20g02419 . 175 299 C2C2-CO-like Transcription Factor family AT1G78600 45.255 3.16e-21 85.5
Chmo15g02549 ACH,CSH 9 355 C2C2-CO-like Transcription Factor family AT5G57660 42.623 1.28e-76 238.0
Chmo6g01075 ACH,CSH 286 331 C2C2-CO-like Transcription Factor family AT5G15850 52.174 1.73e-09 55.5
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chmo CCT 5.5e-18 CL0281 TR Others