AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g01118 ATGGCTCAGAAGAGAACCACCACCACCTCCGCCACCGTACACGGCGGCGACAGCTTACTAGAAAAGCTACCGGAAAGCATCCTTATTAATGAAATATTATTATTAAAACTAGAACCAGAAACACTAACCACACTTTGTTCCTTAGCCTGTGTTTCAACAAGCCTTAAATCATCCGTACATAAAACACTCTCTTCTTTCTCCTCACTCGATCTCTCCACGTTTTCACTCGATTCACAAACATTTGATGGAATAACAAAAAGGTTCCGGAACATCAAGAAGATCACCTTGGATTGCCTCCGTCTGAATGATTCCACTGTAGGAAGTATTCTTGGACCACATGTTGAAGAATTGATTTTGTTGAAATGTTATTCACTCTCTTTTAAACTTTTTACTCGCATTGGGGAAACTTGTCCAAATTTAAGGGTGCTGACCCTTGAGATTTCTGGCTTCATTGAGAAGTCTGCACAACTAATGGGCGTGAACCTTGGAGGCTCAATTGAAAGTTGTCGATACTTGGAGTCCCTCAGAGTTAAAGTTCGTGGAGGAGAAATCAATAATCACAGCCTAATGTTGGGTCGTATCTGCATCTTGATGCCCCAAACGGTCAGGGTCCTCAAGCTTGAACCGGCTTGTGGATCAGATATTTCGGCCTTTATAAGAGTGTTAACTATGAGGGCTCCTATCACTCCTGCGGATGCTGCACAAACGTTGACACACATATCACTAGTTATAGATAAAATTACTGATGATGTTATTCAAACTATTGCACATTGTCTTCCTTTGCTGACTGAGTTGGATCTTAAAGACAGGCCAGAATATGAACCATATGATGACCTATCTGACTTCGGGGTTCAGTCATTAGTTGGCTGTAAGTATCTGACAAGCCTATCCCTTATACGCAGTCGACAACGTATTCTTACTTCATTCAAAAGGGTGACTGATATGGGCATGTTTTTGCTATCAGAGGGTTGCAAAGGATTAGAATCAGTTAGACTTGGTGGGTTTTCTAAAGTGACTGATGCTGGCTTCACATCAATCTTCAATGCATGTTTGAAATTGAAGAAATTTGAGATTCAAAATGCTTCCCTTTTAACAGACTTGACATTCCAAGATGTCAGTAAGGTTCCTAGGTCTCTTGTTGAGGTTAAGTTGGTGTCGTGTAGTTCTATTACCAGCGAGGCTGTGAGTGAATTGGCGACATGCAGTTTGTTAGAGGTTCTTGATTTGCTTGGTTGCAGAAGTGTAGCAGATTCTTGTCTTAACAATGTTTCCCGCCTTGATTTGTTGACATGTTTAAACTTAGGGGGTGCGGATGTTACTGATGTTGGTATGAAGGTTTTAGGTATAGGGAATGCGCCTATTGCTTGCTTATCTTTAAGAGGCTGCAAGAGGGTAACCGATAAAGGGATCATGTTTTTGTTACGAAGTGAAGGAAAAATCACCAAAAATTTGTCATCTCTTGATCTCGGTCACATGCCTGGAATTACAGATAATGCTATTGCCACCATTGCTGATGTTTGTGCAGGGCTTACAGAACTGTGCATCAGAAACTGTTTTCATGTTACAGATGCATCCGTGAAGACTTTAGCTTTTATGGGAAGGTTACGGAGGCTCGATCTGTATAATTGTACTGCATTATCCGCTAAATCTTCTGAATATCTGAAGAAGCCTTTGTTTCGTGGCTTACAATGGATTGGAATTGGAGGGACCCGAATGTTTTGTGGAGATGTTGGGTTAGCTGAAATATACAATGAAAAACGCTGGTTGTTTATGTGTGCTGATGGTTGTGAGGTGGGATGTCACGATGGATGGCAATATCATAAAACTTGA 1830 41.2 MAQKRTTTTSATVHGGDSLLEKLPESILINEILLLKLEPETLTTLCSLACVSTSLKSSVHKTLSSFSSLDLSTFSLDSQTFDGITKRFRNIKKITLDCLRLNDSTVGSILGPHVEELILLKCYSLSFKLFTRIGETCPNLRVLTLEISGFIEKSAQLMGVNLGGSIESCRYLESLRVKVRGGEINNHSLMLGRICILMPQTVRVLKLEPACGSDISAFIRVLTMRAPITPADAAQTLTHISLVIDKITDDVIQTIAHCLPLLTELDLKDRPEYEPYDDLSDFGVQSLVGCKYLTSLSLIRSRQRILTSFKRVTDMGMFLLSEGCKGLESVRLGGFSKVTDAGFTSIFNACLKLKKFEIQNASLLTDLTFQDVSKVPRSLVEVKLVSCSSITSEAVSELATCSLLEVLDLLGCRSVADSCLNNVSRLDLLTCLNLGGADVTDVGMKVLGIGNAPIACLSLRGCKRVTDKGIMFLLRSEGKITKNLSSLDLGHMPGITDNAIATIADVCAGLTELCIRNCFHVTDASVKTLAFMGRLRRLDLYNCTALSAKSSEYLKKPLFRGLQWIGIGGTRMFCGDVGLAEIYNEKRWLFMCADGCEVGCHDGWQYHKT 609
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g01118 609 SUPERFAMILY RNI-like 312 574 - -
Chmo14g01118 609 SUPERFAMILY RNI-like 43 366 - -
Chmo14g01118 609 PANTHER UNCHARACTERIZED 48 400 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Chmo14g01118 609 SMART LRR-CC-2 481 506 IPR006553 -
Chmo14g01118 609 SMART LRR-CC-2 507 530 IPR006553 -
Chmo14g01118 609 SMART LRR-CC-2 451 476 IPR006553 -
Chmo14g01118 609 SMART LRR-CC-2 532 568 IPR006553 -
Chmo14g01118 609 SMART LRR-CC-2 401 426 IPR006553 -
Chmo14g01118 609 SMART LRR-CC-2 324 349 IPR006553 -
Chmo14g01118 609 SMART LRR-CC-2 350 375 IPR006553 -
Chmo14g01118 609 Gene3D Ribonuclease Inhibitor 53 476 IPR032675 -
Chmo14g01118 609 Gene3D Ribonuclease Inhibitor 479 558 IPR032675 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g01118 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:63953276 Chmo14g01118 Chmo-Chr14:59221504 dispersed
Chmo Chmo-Chr13:64120282 Chmo14g01118 Chmo-Chr14:59221504 dispersed
Chmo Chmo-Chr14:59221504 Chmo15g01067 Chmo-Chr15:61464241 dispersed
Chmo Chmo-Chr14:59186402 Chmo14g01118 Chmo-Chr14:59221504 tandem