AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g01227 ATGATGAAGATGAAAAGCAAATACCTCAAACTATTAATCTTCCTCTTCATCCTTAACTCCATCACTTTTGCACTTTACTTCTCATCACACCCTCATAATAAACAAAACCCTCATCACCAATTACCTCAATTTGACACTCAAGATCATACCCATTTAATAGTTTCATTTTCTACCACTAATAACAGCTCAAATAAACCATGGCCCATTTTACCATCTTACCTCCCTTGGTCCTTATCCTCATCTCCAAACACCCCTGCTTTTAGATCTTGTGAGTCTTACTTTGGTAACGGCTTTACCCGCCGTGTCGATGTCCTTAAGCCCGAAAAGGGTATTCGAAAAATGGGTCATGGGGGATCAGGTGGATGGTTTAGGTGTTTTTTTAGTGAGACGTTGAGGAGTTCGATATGTGAAGGTGGAGGGATTAGGATGCATCCGGATAAGATTAAAATGTCGAATGGGGGCGAGGTTTTGGAGAGTGTGATTGGGAGAGGGGAGGATGAGGAATTGCCTCGGTTTGAGTTTGGTGCTTTTGATATTCAAGTTGGGTCGGTGTCGAAAAAGAATAACAAGCTTGCGGATGAGGCGTTTTTGAATGAGTTTTTGCAAAATGGCGCGGTTTCTAGACATGCTATGAGGGATTTGGTTGGTTCTGTTAAGTTAGTTGGTGCTGATGAGTTTGAGTGTTCTGAGTGGGTTGAGGAGCCGACACTTTTGATCACTCGCTACGAGTATGCAAACCTTTTTCACACGGTCACGGACTGGTATAGTGCGTATGTGTCTTCCAGAGTTACTGGCTTGCCAAATCGGCCTCAATTGGTTTTTGTAGACGGTCACTGCATGACACAATTGGAAGAGACATGGAAAGCTGTGTTCTCTGGTCTAAGATATGCAAAGAATTTCAGTGGCCCAGTTTGCTTTCGTCATGCTATTCTCTCACCTTTGGGTTATGAAACCGCCATGTTCAAGGGTCTGTCTGAAAACATTGATTGTTATGGGGCTTCTGCCCATGATCTATGGCAGAACCCTGATGACAAAAAAACAGCCAGGATCTCGGAATTTGGTGAGATGATAAGAGCTGCGTTTTCACTTCCTTTACACCGACCCCACCAGAGCTCAAAGTCAGGGTCACAAACTCATAATGTCCTCTTTGTCCGACGTGAGGATTACTTAGCTCATCCTCGCCATGGTGGAAAGGTTCAATCAAGGCTTAGTAATGAACAAGAAGTATTTGATGCTTTGAAAAGCTGGTCATCAAGTCACACAGAATGCAGAATTAATTTAGTAAATGGACTTTTTGCACATATGTCTATGAAAGAGCAAGTGAAAGCCATTCAAGATGCATCAGTTATTGTGGGTGCTCATGGTGCAGGACTGACTCACATAGTGTCGGCGTCACCAGATGCAGAAATTCTAGAGATTGTAGCTAGTGAGTTTCGGAGGCCTCATTTTGAACTAATTGCTCAATGGAAGGGGTTAAAATACCACCCAATATATCTGGGTGGATCACATGCTAATCCAACAGTAGTTATTGAAAAGCTTAGGAACATTTTGAAGAGCATAGGATGTTGA 1569 42.77 MMKMKSKYLKLLIFLFILNSITFALYFSSHPHNKQNPHHQLPQFDTQDHTHLIVSFSTTNNSSNKPWPILPSYLPWSLSSSPNTPAFRSCESYFGNGFTRRVDVLKPEKGIRKMGHGGSGGWFRCFFSETLRSSICEGGGIRMHPDKIKMSNGGEVLESVIGRGEDEELPRFEFGAFDIQVGSVSKKNNKLADEAFLNEFLQNGAVSRHAMRDLVGSVKLVGADEFECSEWVEEPTLLITRYEYANLFHTVTDWYSAYVSSRVTGLPNRPQLVFVDGHCMTQLEETWKAVFSGLRYAKNFSGPVCFRHAILSPLGYETAMFKGLSENIDCYGASAHDLWQNPDDKKTARISEFGEMIRAAFSLPLHRPHQSSKSGSQTHNVLFVRREDYLAHPRHGGKVQSRLSNEQEVFDALKSWSSSHTECRINLVNGLFAHMSMKEQVKAIQDASVIVGAHGAGLTHIVSASPDAEILEIVASEFRRPHFELIAQWKGLKYHPIYLGGSHANPTVVIEKLRNILKSIGC 522
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g01227 522 PANTHER PUTATIVE-RELATED 12 522 IPR007657 GO:0016757(InterPro)
Chmo14g01227 522 Pfam Glycosyltransferase 61 355 470 IPR049625 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g01227 K03714 glycoprotein 2-beta-D-xylosyltransferase [EC:2.4.2.38]
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Event-related genes

Select Gene_1 Gene_2 Event_name
213801 Chmo14g01227 Chmo15g01205
216577 Chmo13g01374 Chmo14g01227
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:71663504 Chmo14g01227 Chmo-Chr14:64498704 wgd
Chmo Chmo-Chr14:64498704 Chmo15g01205 Chmo-Chr15:70215389 wgd