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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g03502 ATGGCAATATCCACCAACCTTTTATTTCTCTACATGGTGATATCCGCCGTTCTGATATCCACTTTCCTCATGCCGCCCGCTCATGCCTCTTCGGGCGGCGATGAGTTTAGCTGGATAACAAACGGCGGAGCATCAGGTGGATGCAAAGGCTCTATAGCCGAGTGTATGGGCTCAGGAGAAATGGAAATGGAATCAGAGAGCACAAGACGCATACTAGCAACTACTAATTATATTAGCTATGGTGCACTACAAGGAAACAATATACCATGCTCGCAAAGAGGTGCGTCGTATTATAATTGTCAATCTGGTGGTCAAGCTAATCCGTACCAGCGTGGTTGCAGTACTATTACTCGTTGTCAACGTTAG 366 46.17 MAISTNLLFLYMVISAVLISTFLMPPAHASSGGDEFSWITNGGASGGCKGSIAECMGSGEMEMESESTRRILATTNYISYGALQGNNIPCSQRGASYYNCQSGGQANPYQRGCSTITRCQR 121
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g03502 121 Pfam Rapid ALkalinization Factor (RALF) 60 121 IPR008801 -
Chmo14g03502 121 PANTHER RAPID ALKALINIZATION FACTOR-LIKE 13 121 - GO:0009506(PANTHER)|GO:0019722(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g03502 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
47160 Chmo13g03665 Chmo14g03502
48790 Chmo14g03502 Chmo15g03609
48791 Chmo14g03502 Chmo1g04207
48792 Chmo14g03502 Chmo2g03779
48793 Chmo14g03502 Chmo3g04189
228236 Chmo13g03665 Chmo14g03502
237206 Chmo14g03502 Chmo15g03609
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:241486649 Chmo19g04354 Chmo-Chr19:246916277 dispersed
Chmo Chmo-Chr1:264475277 Chmo14g03502 Chmo-Chr14:241486649 wgd
Chmo Chmo-Chr13:266143002 Chmo14g03502 Chmo-Chr14:241486649 wgd
Chmo Chmo-Chr14:241486649 Chmo15g03609 Chmo-Chr15:241911391 wgd
Chmo Chmo-Chr14:241486649 Chmo2g03779 Chmo-Chr2:233291637 wgd
Chmo Chmo-Chr14:241486649 Chmo3g04189 Chmo-Chr3:243712937 wgd