AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00198 ATGGCTGACAAAAAACACACACAACACATTTTATCAAAACAAAGATCATGGTCACCCGACATAAACCGCGACTTAGAGTGGCAGAAACTCAAGACGAAACAACGACATCGTTTCAACCAGCTTTGTCGTAGCAAGAGTACTGTTGATGATCATGGTGGTGACGTCACTGATGATGATGTTAAGGAGTTGAAAGCTTGTTTTGATTTAGGGTTTGGTTTTGATAAGCTGGATGATATGGACCCGAAACTTACGAGTGCTTTTCCTGCGCTCGAGCTGTATGCTGCGGTTAAACGAGGGTATAATTGTGGTGGAATGTTGTCAAGGTCTTCGTCGTCGATTAGTACTGATTCGTGTTCGAGTTCTTCTTCAAGTGTTGCTACGACGTCTATTGTTGATCCAAGTGATGATCCGCAAAAGGTAAAGGCGAAACTGAAACAATGGGCTCAACTCGTTGGTTGTTCGATTCAGGAAACTTCTTCCAACGACGACAAAAATGTTGCACAATAG 507 42.8 MADKKHTQHILSKQRSWSPDINRDLEWQKLKTKQRHRFNQLCRSKSTVDDHGGDVTDDDVKELKACFDLGFGFDKLDDMDPKLTSAFPALELYAAVKRGYNCGGMLSRSSSSISTDSCSSSSSSVATTSIVDPSDDPQKVKAKLKQWAQLVGCSIQETSSNDDKNVAQ 168
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00198 168 PANTHER OSJNBA0071G03.3 PROTEIN 9 156 - -
Chmo15g00198 168 MobiDBLite consensus disorder prediction 108 138 - -
Chmo15g00198 168 MobiDBLite consensus disorder prediction 108 134 - -
Chmo15g00198 168 Pfam Protein of unknown function (DUF1685) 55 112 IPR012881 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00198 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:11257805 Chmo15g04772 Chmo-Chr15:294548253 dispersed
Chmo Chmo-Chr13:6297240 Chmo15g00198 Chmo-Chr15:11257805 wgd
Chmo Chmo-Chr14:10105190 Chmo15g00198 Chmo-Chr15:11257805 wgd