AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00389 ATGATTCAGACCTATTTCCTTCTGCAGATAAAGATTGGATTGAAGATGACCTTTTTGGGCAGATGGAAGGTCTTGATAACAAAAAAAACGAACGTTGATTCAGATCCTTTCCCTTCTACTGGTGGAGATTGGGCTCAAGATGACCTTTTTGCCAACACGACCTCTGCAACTTTTCAGCAAGCTGAGCCGTTGGATTCAGTTGTTCAAGCAAATGACGGGTTTCCAGTTGTTCAAGCAACTTTTAAAAATGAAGGTCTTGATAACAAAAAAACGAACGTTGATTCAGATCCTTTCCCTTCTACTGGCGAGGATTGGGCTCAAGATGACTTTTTTGCCAACACGACCTCTGCAACTTTTCAGCAAGCTGAGCCGTTAGATCCAGTTGTTCAAGCAAATGACGGGTTTTCAGGTCATTCAAATGATCATGATTCAAAAGGTGTGGATGAAGAAGACTGGTTTAATGATGGTAATTGGCAGAAAAATAGTGCCAGTAATACTGCGGTCTCTCTGCAGGCTGACAAGTTAGACATGTTTGACAAGCATGATGACGGATCATTGCAGGATAATTTGAATGATAAATCTGCAGAAGGTGTCGATGTGGATTGGTTTGAAAATACAAACTGGCAGAAAAGTGCTACAAACAACACAACTATCAATAAAGATGATAATTTATTTGATATGAAACCGCAGAATGATGCAGTTTCTTCCTCGTCGTTGTTCAACGACTTGATTCAGAACGACAGTTCAGATCCTGATAATTCAAAGAAACAACAATCAGACGCCACTGACTGGTTCCAAGATAGTCAGTGGGCGATTGGTGCTTCTAGCTCTACTACTAATGTGGCGACCAACAAAGATGATGATGCGTTTGATGATTGGAACGATTTTACAAGCTCAACTGGTAATGAGAGAGTTGCTGCTGGTGACAAGATGTCAGAATTAAATCTCTTTTCATCTACAGCCGATACACGTGCACAAGAAGTGGATTTTGGCAACTTTTCACAGTCGGATCTATTTTCTGGTTCATTTAGTAATAAAAATCCAACTGATACTCAGGCAGGGTTTGATATCTTTTCACAAGTTTCTACAGCAAGCAGGAATGCTAATGTCGAAGCTGAAAATAGTGCCGAGAGACCAAAGAACGACGAGTTTTCCCTCAATGCATCTACAAGTCCGAATAATGATGTGCAGATGCTGTTGTCACAGATGCATGACTTGTCTTTTATGCTCAAGAGCGAGCTTTCAATCCCTTCGAGGCCGGATGATAGCGGTTCTTCTCACAGTTAA 1287 41.03 MIQTYFLLQIKIGLKMTFLGRWKVLITKKTNVDSDPFPSTGGDWAQDDLFANTTSATFQQAEPLDSVVQANDGFPVVQATFKNEGLDNKKTNVDSDPFPSTGEDWAQDDFFANTTSATFQQAEPLDPVVQANDGFSGHSNDHDSKGVDEEDWFNDGNWQKNSASNTAVSLQADKLDMFDKHDDGSLQDNLNDKSAEGVDVDWFENTNWQKSATNNTTINKDDNLFDMKPQNDAVSSSSLFNDLIQNDSSDPDNSKKQQSDATDWFQDSQWAIGASSSTTNVATNKDDDAFDDWNDFTSSTGNERVAAGDKMSELNLFSSTADTRAQEVDFGNFSQSDLFSGSFSNKNPTDTQAGFDIFSQVSTASRNANVEAENSAERPKNDEFSLNASTSPNNDVQMLLSQMHDLSFMLKSELSIPSRPDDSGSSHS 428
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00389 428 MobiDBLite consensus disorder prediction 138 155 - -
Chmo15g00389 428 MobiDBLite consensus disorder prediction 371 395 - -
Chmo15g00389 428 PANTHER DENTIN SIALOPHOSPHOPROTEIN-RELATED 238 423 - -
Chmo15g00389 428 MobiDBLite consensus disorder prediction 381 395 - -
Chmo15g00389 428 MobiDBLite consensus disorder prediction 242 262 - -
Chmo15g00389 428 MobiDBLite consensus disorder prediction 129 160 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00389 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
213576 Chmo14g00527 Chmo15g00389
226160 Chmo15g00389 Chmo13g00548
238900 Chmo13g00548 Chmo15g00389
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:20230111 Chmo9g04649 Chmo-Chr9:251465445 dispersed
Chmo Chmo-Chr13:24909642 Chmo15g00389 Chmo-Chr15:20230111 wgd
Chmo Chmo-Chr14:21980448 Chmo15g00389 Chmo-Chr15:20230111 wgd