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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00390 ATGGCAATAAACAGGGTTGGATCATCAGGAGGAGCATCATGTAATCCAGCAATAGTAAAGATGTTGATAACATTTATAGGAATAAGTATGGTTGGTTATTTAATAGGTCCTCCTTTATATTGGCATCTTCTTGAAGCCCTTCATCGCTCTTCTGTTGCTGCTGTTTCTTGCCCTGTTTGCAACTGTGATTGTGATTCTCAACCTCTTCTTTCCATTCCTCAAGCGCTAAGCAACGGTTCCTTCACAGATTGTGCAAAGCATGATCCTGAAGTGAGTGGAGACACAGAAAAGAATTTCGTCGAGCTTCTCTCTGAAGAATTAAAGCTACGTGAAGCTGAAGCTTTAGAAAGTCAACAACGTGCTGACATGGCACTTCTCGAGGCCAAGAAGTTAACATCCCAATATCAAAAAGAAGCAGACAAGTGTAATTCAGGAATGGAAACTTGTGAAGAAGCTCGTGAAAAAGCCGAAGCAGCTTTACTAGCACAAAAACAACAAAGTGAAATGTGGGAATTAAGAGCCAAACAAAGAGGTTGGAAAGAAGGCAATACTAAGTCTGTAAACACTGCTTGA 573 40.66 MAINRVGSSGGASCNPAIVKMLITFIGISMVGYLIGPPLYWHLLEALHRSSVAAVSCPVCNCDCDSQPLLSIPQALSNGSFTDCAKHDPEVSGDTEKNFVELLSEELKLREAEALESQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALLAQKQQSEMWELRAKQRGWKEGNTKSVNTA 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00390 190 Pfam Protein of unknown function (DUF1068) 17 182 IPR010471 -
Chmo15g00390 190 Coils Coil 109 129 - -
Chmo15g00390 190 PANTHER EXPRESSED PROTEIN 13 188 - -
Chmo15g00390 190 Coils Coil 146 166 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00390 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
49113 Chmo15g00390 Chmo22g04691
213577 Chmo14g00531 Chmo15g00390
226161 Chmo15g00390 Chmo13g00549
238901 Chmo13g00549 Chmo15g00390
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:20392980 Chmo1g01130 Chmo-Chr1:57176727 dispersed
Chmo Chmo-Chr13:24946980 Chmo15g00390 Chmo-Chr15:20392980 wgd
Chmo Chmo-Chr14:22016990 Chmo15g00390 Chmo-Chr15:20392980 wgd
Chmo Chmo-Chr15:20392980 Chmo22g04691 Chmo-Chr22:287876885 wgd
Chmo Chmo-Chr15:20392980 Chmo23g04646 Chmo-Chr23:279812840 wgd
Chmo Chmo-Chr15:20392980 Chmo24g04640 Chmo-Chr24:283378822 wgd