Gene detail

AGRP Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chmo15g00402	ATGGATTTTGAGTTACGAAGAGCGAGAGAGAAACTAGAAAAGGAACAAAAAGATCGAAAAGAAAAAGCGAAACAAAGATTGGATAAAGAAAGAAAAGCTAAACAAGAAGCCACACGTCAGCGTGAAGCTATTGAGGCTGCTCAAAGATCTAGAAGGATTCATGCTATGGAAGCTCAACTGCAGGCAGATCAGCAGATGGAAGAGAACATCTTTTCCGGAAGAGGAATTTCGTTTACTCGTGTTTTAGAAGCCGTACCTTTTGAGGGTTCTGGAGATAAGATCAAACTACCAAATTCATGTTTCAACGATTTATCCGGTGAAGGTGCTTTTGAAAAAGGTCCGCTTCATTTCCAGTTGTCTGTAGTTGACCAAGATAAGTCTTCAAAGTCAGACCACGGGTCAACCCATGCCGGAGTCTTGGAATTTAGTGCTGAAGAAGGTACTGTCGGGATCCCGCCTCACATTTGGAATAACTTATACTCTAAACAAGATCCAATGACTCCATTAATTGAAGTGAAGTACGTCTGGTTAGCAAAGGGAACATATGCAAAGCTTCAATCAGAAGAACTCGGGTTCTCAGATATACCAAACCACAAAGCCGTTCTTGAAACAACCCTTCGTCAGCATGCAACTTTATCCGAAAATGAAGTTTTAACTGTCAAACATGGTGTGTTGACTTACCATCTATGTGTACTTGAGCTGAAACCCTCACCAAGTGTATCTGTTCTTGAAACAGATATTGAAGTCGACATTATGGGTCCTGATACACTTCCTGAAAAACCCAACAACCAACACGTTCTGAAACCACTAACGTTCGGGAAATCAGAATCTGGTGTTATAAATGAAGGGGAATACGTTTATTACAAATTTTCAGTAGATGATGATACATGGGGTATAATTAGTCGAGGAGATGCTGAAATTGAAGTGAAGTTAGATTCAGAAGCTAAAGATGGAGATACTGATCTTTATCTTTCACAACACCCGTTATTATTCCCAAACACGCACCAACATGGTTGGTCTAGCCATGACATGGGTTCAAAATGCTTAGTTCTTGGGTCAAAGGACCAGAACCTGGGTGCTGGAACTTACAGTGTCGGTGTATATGGCTTCAAAGGAACCACAAAATACAATATTATAGTATCCGTTCAAGATACTTCCAACTCAAAGGTAGTTCAACAACCTGTCTCTGCAGCTTCTTCTTCATCAACAGCGGATACTGTAGAATGCAGCAATTGCAAACATTATATACCCTTGAGAACCATAGCACTTCATGAGGCGTATTGCAGGAGACATAACGTCGTTTGTCAACATGAGGGATGTGGTATAGTGTTGAGGACTGAAGAGGTTAAGAACCATGTTCATTGCGAGAAATGTGGACTGGCTTTTCATAGTGGAGAGATTGAAAAACATATGAAAGTGTTTCATGAGCCACTAACTTGTCCGTGTGGGGTCATCCTTGAAAAGACACAGATGGTGCAACACCAGTCTTCAGAGTGTGCCTTACGTCTTGTGACATGTCGATTTTGTGGAGACATGGTTCAAGCTGGTTCTTTAGCTGCTGATACACGGGATCGGTTAAGAGGACTCTCAGAGCATGAGAGTCTTTGTGGGTCCAGAACTGCCCCATGTGACTCTTGTGGTCGGTCTGTCATGTTGAAAGAAATGGACATTCATCAAGTAGCTGTTCATCAGAAGAGCTGA	1701	41.74	MDFELRRAREKLEKEQKDRKEKAKQRLDKERKAKQEATRQREAIEAAQRSRRIHAMEAQLQADQQMEENIFSGRGISFTRVLEAVPFEGSGDKIKLPNSCFNDLSGEGAFEKGPLHFQLSVVDQDKSSKSDHGSTHAGVLEFSAEEGTVGIPPHIWNNLYSKQDPMTPLIEVKYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSENEVLTVKHGVLTYHLCVLELKPSPSVSVLETDIEVDIMGPDTLPEKPNNQHVLKPLTFGKSESGVINEGEYVYYKFSVDDDTWGIISRGDAEIEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDMGSKCLVLGSKDQNLGAGTYSVGVYGFKGTTKYNIIVSVQDTSNSKVVQQPVSAASSSSTADTVECSNCKHYIPLRTIALHEAYCRRHNVVCQHEGCGIVLRTEEVKNHVHCEKCGLAFHSGEIEKHMKVFHEPLTCPCGVILEKTQMVQHQSSECALRLVTCRFCGDMVQAGSLAADTRDRLRGLSEHESLCGSRTAPCDSCGRSVMLKEMDIHQVAVHQKS	566

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chmo15g00402	566	Gene3D	-	68	177	IPR042299	-
	Chmo15g00402	566	PANTHER	UBIQUITIN FUSION DEGRADATON PROTEIN 1	1	538	IPR004854	GO:0006511(InterPro)\|GO:0030433(PANTHER)\|GO:0031593(PANTHER)\|GO:0034098(PANTHER)\|GO:0071712(PANTHER)
	Chmo15g00402	566	Gene3D	-	274	388	-	-
	Chmo15g00402	566	MobiDBLite	consensus disorder prediction	1	45	-	-
	Chmo15g00402	566	Pfam	Ubiquitin fusion degradation protein UFD1	90	254	IPR004854	GO:0006511(InterPro)
	Chmo15g00402	566	SUPERFAMILY	TRAF domain-like	407	455	-	-
	Chmo15g00402	566	Coils	Coil	5	50	-	-
	Chmo15g00402	566	Pfam	TRAFD1-XAF1, zinc finger	529	558	IPR049439	-
	Chmo15g00402	566	Gene3D	Zinc-RING finger domain, C3HC4 (zinc finger)	474	525	IPR013083	-
	Chmo15g00402	566	Gene3D	-	179	252	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chmo15g00402	K14016	ubiquitin fusion degradation protein 1

Event-related genes

Select	Gene_1	Gene_2	Event_name
	213581	Chmo14g00542	Chmo15g00402

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Chmo	Chmo-Chr13:25104333	Chmo15g00402	Chmo-Chr15:20824028	dispersed
	Chmo	Chmo-Chr14:22539835	Chmo15g00402	Chmo-Chr15:20824028	dispersed
	Chmo	Chmo-Chr15:20824028	Chmo8g04112	Chmo-Chr8:235122506	dispersed
	Chmo	Chmo-Chr10:84502922	Chmo15g00402	Chmo-Chr15:20824028	transposed
	Chmo	Chmo-Chr14:22539382	Chmo15g00402	Chmo-Chr15:20824028	wgd