AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00451 ATGCAATTCTTGACGACAACAACAAACCCATCATTCACATACCCACCACCAATCCACCAATCCAAACACCACCCAATGTTTCCTCTCAAAACCCCATCAAAACCCCACCCCATAAAATCCCAAAAAAACTCAGGGTTTTTATCAGCAATTGGTAATGCAATTGAAGAGCAAGAGTATAGGAAAGCTAGAGCTGAAGTTGTAAGGAAAGGGACTGGTTTAGATGGTTATAATATTGAAGGGATTTCAATTGGTGGTCATGAAACTTGTGTTATTATTCCTGAATTGAAATGTGCTTTCGATATTGGCCGGTGTCCTGCGCGAGCTGTGGCCATGAATTTCTTGTTTATTACTCATGGACATCTTGATCATATTGGTGGGCTACCCATGTATATTGCTACACGTGGTTTATACAGCATGACTCCACCAACTGTATTTGTACCTCCTTCCATCAAAGATGATGTTGAAAACTTGATTGAGCTTCACAGGAAGATGGGTCAAGTGGAATTGAATGTCGATTTGGTTGCATTGGATATAGGAGAAACATACGAGCTACGAAACGACCTTGTTGTACGCCCATTTAAAACACACCATGTCATACCGAGTCAGGGTTATGTCATTTACTCTGTTCGCAAGAAGCTCAAGAAGCAATATATTCATCTAAAAGGAAGGGAAATTGAGAAAAAGAAGAAATCTGGTGTCGAGATAACGGATATCATATTGTCTCCTGAGGTGGCATTCACCGGAGATACAACTTCTGATTTTCTACTTGATCCAAGAAGCTCTGATGCCTTGAGAGCAAAAGTTCTTATAACTGAGGCTACTTTTTTGGACGATAAATGTGACATTGAGCATGCACGAGAACATGGTCACATGCATATTGACGAGATTATAGAGAATGCTAAGTGGATCCGTAACAATGCGGTTCTTTTGACCCATTTCTCCTCCCGCTACCATATCGAGGAAATTCGTCAAGCTGTGACGAAGTTACAGTCGAAGGTTTCAGCCAAAGTGGTTCCTCTTACAGAAGGTTTTAGATCAATGTACTCAACATAA 1053 40.74 MQFLTTTTNPSFTYPPPIHQSKHHPMFPLKTPSKPHPIKSQKNSGFLSAIGNAIEEQEYRKARAEVVRKGTGLDGYNIEGISIGGHETCVIIPELKCAFDIGRCPARAVAMNFLFITHGHLDHIGGLPMYIATRGLYSMTPPTVFVPPSIKDDVENLIELHRKMGQVELNVDLVALDIGETYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYIHLKGREIEKKKKSGVEITDIILSPEVAFTGDTTSDFLLDPRSSDALRAKVLITEATFLDDKCDIEHAREHGHMHIDEIIENAKWIRNNAVLLTHFSSRYHIEEIRQAVTKLQSKVSAKVVPLTEGFRSMYST 350
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00451 350 PANTHER TRNASE Z TRZ1 36 344 - -
Chmo15g00451 350 MobiDBLite consensus disorder prediction 1 26 - -
Chmo15g00451 350 SUPERFAMILY Metallo-hydrolase-oxidoreductase 110 327 IPR036866 -
Chmo15g00451 350 Gene3D - 76 345 IPR036866 -
Chmo15g00451 350 MobiDBLite consensus disorder prediction 1 16 - -
Chmo15g00451 350 CDD RNaseZ-MBL-fold 75 273 - -
Chmo15g00451 350 Pfam Beta-lactamase superfamily domain 110 313 IPR001279 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00451 K00784 ribonuclease Z [EC:3.1.26.11]
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Event-related genes

Select Gene_1 Gene_2 Event_name
226176 Chmo15g00451 Chmo13g00611
238916 Chmo13g00611 Chmo15g00451
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:23410313 Chmo4g03820 Chmo-Chr4:247074161 dispersed
Chmo Chmo-Chr13:27591073 Chmo15g00451 Chmo-Chr15:23410313 wgd