AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo15g00484 | ATGGCATTTCGTCACACAGGGTCCACCACAAACCAATGGGTTGCATGGGCCTTAAATATTGGTGGGTCAGGTATGATTGGTGCACAAGCCCTTGTAGCAGTAACAAGCTCAAACGGGTCAGTTGATGCTTATACTAGTGCTGTAACAAGTTTTGGTACCACTTTACAAAGGAGCACTTTAAGCTTTGAAGTGCCAGTGATTAGAGCTGAGAGAGTTAATGGAGATGTGGTTATTTATGCAACGTTGGTTTTGCCAAGTGGAGGGACGAGATTTAATCAAGTGTGGCAAGTGGGCCCGGTTAATAATGGAGCTCCGCGTATCCATTTGTTTGGTAATGATAATAGGAACTCGGTTGGGTCGGTTGACTTTAGTACTGGTCAAACTGGTGCTGGTGGTAGTGTTGGTGGATCACGGATGCGAAGGAGGAATACTCATGGAGTATTAAACGCTGTTAGTTGGGGAGTATTGATGCCTATGGGAGCAATGACAGCAAGATATTTAAAGGTGTTTAAAGTAGCTAATCCAGCCTGGTTCTATATCCATGCTGCTTGCCAAACATCAGCCTATGGCGTAGGTGTAGCGGGATGGGCCACTGGACTCAAGCTAGGCAGTGACTCAGCCGGAATCACTCACACGAGTCATCGCAACATTGGAATCATCCTCTTTTCACTTGGAACACTTCAGGTTTTCGCTTTGCTGTTGAGGCCTAAGCCAGACAACAAGTACAGATTTTATTGGAACATATACCACCATGGCCTTGGATACTCAGTGATCATCTTGAGCATTATCAACGTCTACGAGGGACTTGATATCTTGGACCCTGAGAAGAAGTGGAAGCACGCCTACACCGGCATACTTATATCTTTGGGGGCTATCACGGTTCTGTTAGAAGCTTTGACATGGTTCATCGTTTTGAAGAGGAAGAAGGAAGACAAAAGGACACATGCAGGGACTAATGGTTCATATGGAGTCAATGGATCTGCGTAG | 987 | 45.59 | MAFRHTGSTTNQWVAWALNIGGSGMIGAQALVAVTSSNGSVDAYTSAVTSFGTTLQRSTLSFEVPVIRAERVNGDVVIYATLVLPSGGTRFNQVWQVGPVNNGAPRIHLFGNDNRNSVGSVDFSTGQTGAGGSVGGSRMRRRNTHGVLNAVSWGVLMPMGAMTARYLKVFKVANPAWFYIHAACQTSAYGVGVAGWATGLKLGSDSAGITHTSHRNIGIILFSLGTLQVFALLLRPKPDNKYRFYWNIYHHGLGYSVIILSIINVYEGLDILDPEKKWKHAYTGILISLGAITVLLEALTWFIVLKRKKEDKRTHAGTNGSYGVNGSA | 328 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo15g00484 | 328 | Gene3D | - | 126 | 315 | - | - | |
| Chmo15g00484 | 328 | ProSiteProfiles | DOMON domain profile. | 1 | 98 | IPR005018 | - | |
| Chmo15g00484 | 328 | SMART | 561-7 | 144 | 269 | IPR006593 | - | |
| Chmo15g00484 | 328 | CDD | Cyt-b561-FRRS1-like | 116 | 298 | - | - | |
| Chmo15g00484 | 328 | FunFam | Cytochrome b561 and DOMON domain-containing protein | 123 | 313 | - | - | |
| Chmo15g00484 | 328 | Pfam | Protein of unknown function (DUF568) | 25 | 123 | IPR045265 | - | |
| Chmo15g00484 | 328 | PIRSF | UCP037471 | 1 | 327 | IPR017214 | - | |
| Chmo15g00484 | 328 | PANTHER | CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN | 2 | 309 | - | - | |
| Chmo15g00484 | 328 | Pfam | Eukaryotic cytochrome b561 | 145 | 269 | IPR006593 | - | |
| Chmo15g00484 | 328 | ProSiteProfiles | Cytochrome b561 domain profile. | 104 | 305 | IPR006593 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo15g00484 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr15:25376897 | Chmo1g03454 | Chmo-Chr1:218089970 | dispersed | |
| Chmo | Chmo-Chr4:183083199 | Chmo15g00484 | Chmo-Chr15:25376897 | transposed | |
| Chmo | Chmo-Chr11:48919359 | Chmo15g00484 | Chmo-Chr15:25376897 | transposed | |
| Chmo | Chmo-Chr1:110033756 | Chmo15g00484 | Chmo-Chr15:25376897 | wgd | |
| Chmo | Chmo-Chr13:30203348 | Chmo15g00484 | Chmo-Chr15:25376897 | wgd | |
| Chmo | Chmo-Chr14:27254588 | Chmo15g00484 | Chmo-Chr15:25376897 | wgd | |
| Chmo | Chmo-Chr15:25376897 | Chmo2g01981 | Chmo-Chr2:93360149 | wgd | |
| Chmo | Chmo-Chr15:25376897 | Chmo22g04720 | Chmo-Chr22:288628059 | wgd | |
| Chmo | Chmo-Chr15:25376897 | Chmo23g04709 | Chmo-Chr23:282071063 | wgd | |
| Chmo | Chmo-Chr15:25376897 | Chmo24g04712 | Chmo-Chr24:286260413 | wgd |