Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chmo15g00493	ATGGACTTTTCAGAATCTACGAAAGTTGTATACGATAGGATCCAAAAGATAGAACCCGCAAACGTCTCCAAGATTATCGGGTATCTTCTTTTGCAAGATCATGGTGAACGAGAAATGATAAGATTAGCCTTCGGCCCAGATAACTTAATTCACTCTTTAATCAACAACGCAAAAAACCACCTCAAATTAACTTCCAATACAACCACTGGTCCCGACATTCCTATTCACTTCACACCATTCTCACCTTCGCCTCGTCATTCACCATTAACCATCCAAGTCCCTAATCGTTGCTGTGATCCTCATGGTCAGCCGGTTGACTATGCTCCTATGGTGCATCCATCATCATTTCCTGAAGAATATCATCTCCATAACCAACTTCGTTTCTTGTCAATGGAAGATCATAACGAGTCCATAAACAGCCCGGATTTTTCTTTAGGTCCTAGAGCCAATAGGCGATCTCCAAGTTTACCTGAGTTCCCGTTCAAAGTTTGTCATTACTTTGTTAAAGGTTTTTGTAGGCATGGTAACAACTGTAGGTACATGCATCCTACCCCTGAAAGCTTCTCACAAATCTTTAGCCCTAACATGAGTGAGGACGACCACGTCTTTTCACCAGGGTCCCTTGAAAAACTAGAGTTAGAACTTACTGAGCTCGTGAAATCAAGGAGAGGGTTCCCTGTGTCAATAGCTTCCTTACCAATGTTATATTATGAGAAGTTTGGTAAGATACTTCAAGCTGAGGGATATTTAACTGAGAGTCAAAGACATGGGAAAGCTGGTTATAGTTTGACTAAACTTCTTGCACGCCTTAAGAGTATTGTTCTTATTGATAGGCCTCATGGGCAACACGCGGTCGTGTTGGCTGATGACGTAGCAAAATGTATGGATCATAACGGTGATAGAAATGAACATGGTGGTATTGTTGCGGGTTCTAGACAGATATACTTAACTTTTCCAGCTGAGAGTACTTTTTCGGAGCGCGATGTTTTTAACTACTTCAACAAATTCGGGCCGGTCCATGACGTGAGAATTCCTTGTCAGCAAAAGAGAATGTTTGGATTTGTGACGTTTGTTTTTGCGGATACAGTTAGGCATATTTTAAACAAGGGAAATCCTCATTTCGTTAGTGGTGCACGTGTTTTGGTCAAACCATACCGTGAAAAATATAAGGTTGATGAGAGGAAATATGGAGACACGTTTCAGCATCCTATGTACAACGGTTCTCGCTGTCTTGATACCGATTTTGGGCCACAATCATTGCCCTCGAGGTTAATCAAGAAACAGTTCATTGATGAACAAGAGCAAGCACTTGAATTTGAGAGATCACGTTTCTCAGAGATGCGGTTATCAGCCGATCACCATAACCAAATGCCATTTTTTGGAAACTCACTCGAAGAGTTGATGCTATCAGAAGGCAATGCTCATGCACAACAGTCGGATTTCCCTTCAAATGAGCATTATAATTATCTTCTGGATGTTTTAAACAATGGTGCTGCCAACGAGGACAACATCAGGCAGATCAATACCAAATACAAGGAGGAGAGTAGCCAGGGAGGACTGAATCTTCCAGACAGCCCGTTTGCATCTGCGTTAGGGGGTGAAATACCGACAGTTATATAG	1620	41.91	MDFSESTKVVYDRIQKIEPANVSKIIGYLLLQDHGEREMIRLAFGPDNLIHSLINNAKNHLKLTSNTTTGPDIPIHFTPFSPSPRHSPLTIQVPNRCCDPHGQPVDYAPMVHPSSFPEEYHLHNQLRFLSMEDHNESINSPDFSLGPRANRRSPSLPEFPFKVCHYFVKGFCRHGNNCRYMHPTPESFSQIFSPNMSEDDHVFSPGSLEKLELELTELVKSRRGFPVSIASLPMLYYEKFGKILQAEGYLTESQRHGKAGYSLTKLLARLKSIVLIDRPHGQHAVVLADDVAKCMDHNGDRNEHGGIVAGSRQIYLTFPAESTFSERDVFNYFNKFGPVHDVRIPCQQKRMFGFVTFVFADTVRHILNKGNPHFVSGARVLVKPYREKYKVDERKYGDTFQHPMYNGSRCLDTDFGPQSLPSRLIKKQFIDEQEQALEFERSRFSEMRLSADHHNQMPFFGNSLEELMLSEGNAHAQQSDFPSNEHYNYLLDVLNNGAANEDNIRQINTKYKEESSQGGLNLPDSPFASALGGEIPTVI	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chmo15g00493	539	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	312	387	IPR000504	GO:0003723(InterPro)
	Chmo15g00493	539	SMART	rrm1-1	313	383	IPR000504	GO:0003723(InterPro)
	Chmo15g00493	539	Gene3D	-	158	241	-	-
	Chmo15g00493	539	ProSiteProfiles	Zinc finger C3H1-type profile.	158	185	IPR000571	GO:0046872(InterPro)
	Chmo15g00493	539	ProSiteProfiles	OST-type HTH domain profile.	207	290	IPR025605	-
	Chmo15g00493	539	CDD	RRM-AtC3H46-like	314	383	IPR034365	-
	Chmo15g00493	539	Gene3D	-	318	391	IPR012677	-
	Chmo15g00493	539	Pfam	RNA recognition motif	324	371	IPR000504	GO:0003723(InterPro)
	Chmo15g00493	539	SUPERFAMILY	CCCH zinc finger	161	183	IPR036855	GO:0046872(InterPro)
	Chmo15g00493	539	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	162	183	IPR000571	GO:0046872(InterPro)
	Chmo15g00493	539	SUPERFAMILY	RNA-binding domain, RBD	324	402	IPR035979	GO:0003676(InterPro)
	Chmo15g00493	539	SMART	c3hfinal6	160	184	IPR000571	GO:0046872(InterPro)
	Chmo15g00493	539	FunFam	zinc finger CCCH domain-containing protein 53-like isoform X2	319	390	-	-
	Chmo15g00493	539	PANTHER	RNA-BINDING (RRM-RBD-RNP MOTIFS)	1	530	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chmo15g00493	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	49128	Chmo15g00493	Chmo23g04723
	49129	Chmo15g00493	Chmo24g04734

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Chmo	Chmo-Chr15:25737105	Chmo15g00506	Chmo-Chr15:26430254	dispersed
	Chmo	Chmo-Chr14:27804054	Chmo15g00493	Chmo-Chr15:25737105	wgd