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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00499 ATGCTTCATCAAATTCCACTTCCCCAAAACATGTCTCTGACACATACACAAACTCACACTGATCTTGATTTGATGACCATGAAGCAGAAGCCAGTTCGTAGTTCGGGTGAGATTCATGTGATTGTGGGACCCATGTTTGCTGGTAAAACAACTGCTCTTCTTCGGAGGATTAAATCTGAAGCAACTATTGGAAGGAATATAGCAATGATAAAGTCAAGCAAGGATAATCGATATGCGATAGATTCAGTTGTGACACATGATGGAACAAAGTATCCTTGTTGGGCACTTCCTGATTTGTTGTCTTTTGAACAAAGACTTGGGGAAGAAGCTTATGAAAAGCTGGATGTTATTGGGATTGATGAGGCACAATTCTTTGATGATCTCTATGACTTTTGTTCTAAAGCTGCTGATCATGATGGTAAAACTGTCATAATTGCTGGTCTTGATGGTGATTACTTAAGAAGGAACTTTGGTCCGGTTCTTGATATAGTACCACTTGCTGATACCATAACCAAGTTGACTGCTCGATGTGAATTATGTGGTAAACGAGCTCATTTCACTTTTAGGAAGACCAGCGAGACAAAAGCAGAACTTATTGGCGGGGCGGATATGTATATGCCTGTCTGTCGTCAACATTATGTTAGCGGACAAACGGTGATAAAAAACACTAGACAAACAACCTCAACTACCAGTGCTTAA 699 40.2 MLHQIPLPQNMSLTHTQTHTDLDLMTMKQKPVRSSGEIHVIVGPMFAGKTTALLRRIKSEATIGRNIAMIKSSKDNRYAIDSVVTHDGTKYPCWALPDLLSFEQRLGEEAYEKLDVIGIDEAQFFDDLYDFCSKAADHDGKTVIIAGLDGDYLRRNFGPVLDIVPLADTITKLTARCELCGKRAHFTFRKTSETKAELIGGADMYMPVCRQHYVSGQTVIKNTRQTTSTTSA 232
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00499 232 ProSitePatterns Thymidine kinase cellular-type signature. 200 213 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Chmo15g00499 232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 174 IPR027417 -
Chmo15g00499 232 Pfam Thymidine kinase 36 213 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Chmo15g00499 232 Gene3D - 174 215 - -
Chmo15g00499 232 FunFam Thymidine kinase 32 173 - -
Chmo15g00499 232 FunFam Thymidine kinase 174 216 - -
Chmo15g00499 232 PANTHER THYMIDINE KINASE 28 227 IPR001267 GO:0004797(InterPro)|GO:0004797(PANTHER)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Chmo15g00499 232 PIRSF Tdk 33 228 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Chmo15g00499 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 174 216 - -
Chmo15g00499 232 Gene3D - 29 173 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00499 K00857 thymidine kinase [EC:2.7.1.21]
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Event-related genes

Select Gene_1 Gene_2 Event_name
213606 Chmo14g00613 Chmo15g00499
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:26185301 Chmo20g02169 Chmo-Chr20:123579993 dispersed
Chmo Chmo-Chr14:27372581 Chmo15g00499 Chmo-Chr15:26185301 wgd