AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00524 ATGTCTAACAGAAGTAATATTGATAGAGCTATGGCTACTTATTATAAGAAACCACGGATACGAGATGGCGCGGTTCGTAGGTTTCTTTTCGTAGTTTCGTTAACTTTAGCTGGGGTGTTTTTGTTGTGTTTTCTAGTTGGGATGAATTCGAGTAGTAGTGAGTTAATGCCAGAGAATGAGGTTGAGATTGATAGTATTACGGAAGTTAATTTTAATGTATCGGGTTTGGTTGGTAGTGTTAAGTTGCCTAAGCACAATTATTTGTCGAAAATGTTGGAGGGTAAGAATCAGTTGGCACCAAGGAACATGGATTTGTATCCAAGTTTGGCGAAGGATAGGATAGTTATTGTTCTTTATGTGCACAATCGTCCGCAGTATCTTAAATTAGTTGTGGATAGTTTATCACGTGTGTCGGGAATTAATGAGACTTTGTTGATTGTAAGTCATGACGGATACTTTGACGCAATGAATAAGATTGTGGAAGATATTAGGTTTTGTCAAGTGAAGCAAGTATTTGCGCCTTTTTCGCCTCATATATTTCCGAATGGATTCCCTGGTGTGTCGCCTAATGATTGTAAAGAAAAAGATGACCCGATTGAGAAAAAATGTGAAGGGAGTACTGATCAGTATGGGAATCATCGGTCTCCGAAGATTGTGTCGTTGAAGCATCATTGGTGGTGGATGATGAACACGGTATGGGATGGGCTCAAGGAAACAATAGGTCATTCGGGTGATGTTCTTTTTATAGAAGAAGATCACTTCATTTTCCCAAACGCGTATCAAAATTTGAAGATATTAACGGAGTTGAAACCTACCAAATGTCCGGATTGTTATGCTGTGAATCTTGCTCCAAGTAACGTGAAATCTAGAGGTGAAGGTTGGAATAGTTTAATAGCCGAAAGAATGGGTAACATTGGGTATACTTTTAATAGAACGGTATGGAGGAAAATACATAGAAAAGCTAAAGAGTTTTGTTTCTTTGATGATTATAATTGGGATATAACAATGTGGTCGACGGTGTATCCTTCTTTCGGTGGTTCAGTTTACTCTATGCGAGGGCCTAGGGCTAGTGCGGTTCATTTTGGGAAATGTGGGTTGCATCAAGGTCAAGGTGAAAACGCTGCTTGTGTTGATAATGGTGTGGTGAATATTGACACTGAAGAGATTGATAAGGTTGCCAACATTAAACCCGAGTGGGGAGTACATGTGTTTAGAAATCAAGAAGGGTATCAAGCTGGATTTAGAGGGTGGGGAGGTTGGGGAGATAAAAGAGACCATCAATTATGCTTGGATTTTGCTAAAATGTATCATGTGAGGAACAAAGCATCTTAA 1332 39.26 MSNRSNIDRAMATYYKKPRIRDGAVRRFLFVVSLTLAGVFLLCFLVGMNSSSSELMPENEVEIDSITEVNFNVSGLVGSVKLPKHNYLSKMLEGKNQLAPRNMDLYPSLAKDRIVIVLYVHNRPQYLKLVVDSLSRVSGINETLLIVSHDGYFDAMNKIVEDIRFCQVKQVFAPFSPHIFPNGFPGVSPNDCKEKDDPIEKKCEGSTDQYGNHRSPKIVSLKHHWWWMMNTVWDGLKETIGHSGDVLFIEEDHFIFPNAYQNLKILTELKPTKCPDCYAVNLAPSNVKSRGEGWNSLIAERMGNIGYTFNRTVWRKIHRKAKEFCFFDDYNWDITMWSTVYPSFGGSVYSMRGPRASAVHFGKCGLHQGQGENAACVDNGVVNIDTEEIDKVANIKPEWGVHVFRNQEGYQAGFRGWGGWGDKRDHQLCLDFAKMYHVRNKAS 443
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00524 443 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 113 373 IPR029044 -
Chmo15g00524 443 SUPERFAMILY Nucleotide-diphospho-sugar transferases 112 437 IPR029044 -
Chmo15g00524 443 Pfam N-acetylglucosaminyltransferase II (MGAT2) 100 429 IPR007754 GO:0005795(InterPro)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro)
Chmo15g00524 443 PANTHER BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II 25 438 IPR007754 GO:0000139(PANTHER)|GO:0005795(InterPro)|GO:0006487(PANTHER)|GO:0008455(InterPro)|GO:0008455(PANTHER)|GO:0009312(InterPro)|GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00524 K00736 alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143]
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Event-related genes

Select Gene_1 Gene_2 Event_name
213617 Chmo14g00649 Chmo15g00524
226190 Chmo15g00524 Chmo13g00661
238930 Chmo13g00661 Chmo15g00524
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:30884213 Chmo15g00524 Chmo-Chr15:27410449 wgd
Chmo Chmo-Chr14:28822671 Chmo15g00524 Chmo-Chr15:27410449 wgd