Gene detail

AGRP Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chmo15g00533	ATGGTTGTTGTCGTATCATATTTTGTAATGACCGATGTTGTTGTTGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTGTCTCATAATATCGAATATGAAGGCGATACTGTTCATGTTTCTTTCGTTGTAATCAAGGCTGAATCGCCTTGGCATTTCTCTGAAGACGGCGTCGATCTTGTGATTAGAGACCCGACAGGAGAGTTGGTTTATGATGTATATGACAGCGCTAGTGAGAAGCACGAGTTCATAGCTCAGAAAAAAGGTTTATATAACTTTTGTTTCACAAACAAGTCTCCGTATCACGAGACTGTTGACTTTGATGTTCAAGCTGGACATTTCGCACACTATGATCAGCATGCAAAAGATGAGCATATCAAGCCGTTGTTTGATCAGATAGCAAAACTGGAAGAAGCTCTATACAACATTCAGTTTGAACAGCATTGGTTACAAGCTGAGAATGATCGCCAGGCAGTTGTAAATGAAAAAATGGGTAAGAGAGCAGTCCACAAGGCGCTGATTGAATCAGCAGCACTGATTGGAGCTAGCATCCTCCAGGTTTATCTTCTGCAACGCCTGTTTGAGCGAAAGCTTGGGTCTTCAAGAGTGTAA	612	40.85	MVVVVSYFVMTDVVVGIRFVIDREECLSHNIEYEGDTVHVSFVVIKAESPWHFSEDGVDLVIRDPTGELVYDVYDSASEKHEFIAQKKGLYNFCFTNKSPYHETVDFDVQAGHFAHYDQHAKDEHIKPLFDQIAKLEEALYNIQFEQHWLQAENDRQAVVNEKMGKRAVHKALIESAALIGASILQVYLLQRLFERKLGSSRV	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chmo15g00533	203	PANTHER	TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN	16	195	IPR015720	GO:0005783(PANTHER)\|GO:0005793(PANTHER)\|GO:0005794(PANTHER)\|GO:0006886(PANTHER)\|GO:0006888(PANTHER)\|GO:0007030(PANTHER)\|GO:0030134(PANTHER)
	Chmo15g00533	203	Pfam	emp24-gp25L-p24 family-GOLD	23	195	IPR009038	-
	Chmo15g00533	203	ProSiteProfiles	GOLD domain profile.	24	111	IPR009038	-
	Chmo15g00533	203	SMART	EMP24-GP25L-2	16	195	IPR009038	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chmo15g00533	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	49131	Chmo15g00533	Chmo22g04821
	49132	Chmo15g00533	Chmo23g04773
	49133	Chmo15g00533	Chmo24g04783
	213623	Chmo14g00663	Chmo15g00533
	226195	Chmo15g00533	Chmo13g00672
	238935	Chmo13g00672	Chmo15g00533

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Chmo	Chmo-Chr15:27734419	Chmo18g00809	Chmo-Chr18:34741851	dispersed
	Chmo	Chmo-Chr22:108820190	Chmo15g00533	Chmo-Chr15:27734419	transposed
	Chmo	Chmo-Chr13:31546896	Chmo15g00533	Chmo-Chr15:27734419	wgd
	Chmo	Chmo-Chr14:29540650	Chmo15g00533	Chmo-Chr15:27734419	wgd
	Chmo	Chmo-Chr15:27734419	Chmo22g04821	Chmo-Chr22:292663661	wgd
	Chmo	Chmo-Chr15:27734419	Chmo23g04773	Chmo-Chr23:284155600	wgd
	Chmo	Chmo-Chr15:27734419	Chmo24g04783	Chmo-Chr24:288287084	wgd