AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo15g00597 | ATGCTACGAATCTTAAACAAATTATCCCTCAACAACCGTCGATGGATGAGCACAAGTACAACCAGGGTAATGAGTTTCGGGGACGGTAGCCATGGAGCTCTGGGGTTACCTGGAATAGGTTCAGATGCATATGAACCAACTCCGGTAACATGTTTACCTGATGATGTTTGTAACATTGCTGCTGGACATTATCATTCTCTAGCTGTTACTTCTAATGGACATGTTTGGTCTTGGGGAAGGAATGCTGAAGGTCAACTTGGTCGTCACCTTGATTCTCCTAGAGAAACATGGTTTGAACCACACAGAATAGAGGGGTTGAGTGATGTGCAATCTGCATTTGCATCAGGCGTTGTATCTGCAGCCATTGGAGTCGATGGGTCGTTATGGGTTTGGGGGAAATCAAAGCGTGGTCAGTTGGGTCTTGGAACAGGGATCACTGAGGCTGTTGTTCCTTCAAGGATTAAAGCTCTTGCTAATGAAGAGATAACTAAGGTCTCATTTGGATGGGGACATGCTCTTGCACTCACCAAAGATGGAAAGTTATATGGGTGGGGATATTCAGCCGATGGTAGATTAGGAAAGAGAACAGTTATGGGGGCTTCACCACTGGATTCAATGGCTAATTTGTCAGCAAGCTTAAAGCTTGAAGAGGCAGAGAAACTAGTTGCTGAAGCCATGGATAAAGAAAACGACATGCCTATTATCTGGGAGCCCTGTCTCATTGATGAACTAAAAGGTGTTGAAATTGCAGATATATCATGCGGGCTCGACCACACCTTAATCCTTCTACGTGATGGGACCTTACTGAGTGGTGGTAGCAATGCATATGGGCAGTTGGGCAGATCAACACAAGAATTGGAGTTGCTTCCGGTCGACATAAGTGTCCACCCGGTTTCTATAGCTTCAGGATTAGGTCATTCTTTAGCCATATGCCAGATTCCATCTGCAGAAGGTGGCAGGGACATTTCAGGCATTTTTTCATGGGGTTGGGGACAGAATTCTCAGCTCGGAAGAGAAGGTCCCACAAACATCCCATTGCTCGTGGATGGACTTACAGGGGAAAACCTTTTGTCAGTCTCGGCCGGGCGGGTCCACTCCATTGCTCTTACAAACCAGGGAGAAGTTTTTTCTTGGGGGTGTGGTAGAAATGGCCGGCTTGGTTTGGGAAGTTCAGTGGATGAGGCTGAACCCATGGTGGTCGAGTTTTCTGAAGTAACTAGTGTTTTGCAAGCTGTTTCAGGGTTTGATCATAATCTCGTCCTAACTAGCAGTTAA | 1275 | 46.12 | MLRILNKLSLNNRRWMSTSTTRVMSFGDGSHGALGLPGIGSDAYEPTPVTCLPDDVCNIAAGHYHSLAVTSNGHVWSWGRNAEGQLGRHLDSPRETWFEPHRIEGLSDVQSAFASGVVSAAIGVDGSLWVWGKSKRGQLGLGTGITEAVVPSRIKALANEEITKVSFGWGHALALTKDGKLYGWGYSADGRLGKRTVMGASPLDSMANLSASLKLEEAEKLVAEAMDKENDMPIIWEPCLIDELKGVEIADISCGLDHTLILLRDGTLLSGGSNAYGQLGRSTQELELLPVDISVHPVSIASGLGHSLAICQIPSAEGGRDISGIFSWGWGQNSQLGREGPTNIPLLVDGLTGENLLSVSAGRVHSIALTNQGEVFSWGCGRNGRLGLGSSVDEAEPMVVEFSEVTSVLQAVSGFDHNLVLTSS | 424 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo15g00597 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 249 | 278 | - | - | |
| Chmo15g00597 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 56 | 85 | - | - | |
| Chmo15g00597 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 21 | 72 | IPR000408 | - | |
| Chmo15g00597 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 373 | 424 | IPR000408 | - | |
| Chmo15g00597 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 126 | 178 | IPR000408 | - | |
| Chmo15g00597 | 424 | Gene3D | - | 218 | 424 | IPR009091 | - | |
| Chmo15g00597 | 424 | SUPERFAMILY | RCC1-BLIP-II | 18 | 311 | IPR009091 | - | |
| Chmo15g00597 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 372 | 421 | IPR000408 | - | |
| Chmo15g00597 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 325 | 369 | IPR000408 | - | |
| Chmo15g00597 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 125 | 175 | IPR000408 | - | |
| Chmo15g00597 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 73 | 125 | IPR000408 | - | |
| Chmo15g00597 | 424 | Gene3D | - | 8 | 212 | IPR009091 | - | |
| Chmo15g00597 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 179 | 265 | IPR000408 | - | |
| Chmo15g00597 | 424 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 59 | 69 | IPR000408 | - | |
| Chmo15g00597 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 266 | 313 | IPR000408 | - | |
| Chmo15g00597 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 323 | 372 | IPR000408 | - | |
| Chmo15g00597 | 424 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 18 | 423 | IPR051210 | - | |
| Chmo15g00597 | 424 | Coils | Coil | 208 | 228 | - | - | |
| Chmo15g00597 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 368 | 389 | IPR000408 | - | |
| Chmo15g00597 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 75 | 91 | IPR000408 | - | |
| Chmo15g00597 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 126 | 142 | IPR000408 | - | |
| Chmo15g00597 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 165 | 181 | IPR000408 | - | |
| Chmo15g00597 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 22 | 38 | IPR000408 | - | |
| Chmo15g00597 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 56 | 69 | IPR000408 | - | |
| Chmo15g00597 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 181 | 195 | IPR000408 | - | |
| Chmo15g00597 | 424 | SUPERFAMILY | RCC1-BLIP-II | 325 | 423 | IPR009091 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo15g00597 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 213639 | Chmo14g00713 | Chmo15g00597 | |
| 226210 | Chmo15g00597 | Chmo13g00727 | |
| 238950 | Chmo13g00727 | Chmo15g00597 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr15:31789462 | Chmo3g02871 | Chmo-Chr3:145559768 | dispersed | |
| Chmo | Chmo-Chr13:34698186 | Chmo15g00597 | Chmo-Chr15:31789462 | wgd | |
| Chmo | Chmo-Chr14:32822479 | Chmo15g00597 | Chmo-Chr15:31789462 | wgd |