AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00602 ATGAGAGAAGAAGGCATGAGCTCGAATGGGGACCCACTTCTTTTCCCCAATTCACCTCCTCCCACTGCTGCTGCTAGTTCTGCTGGGGCATCATCACCAGCTTTTGCCACCAATGCTGGCAGTGCAGATTGGTTGGGTCATGGACAGGGATCTAAAGCAGGTTCTCTATCTCGGATTAGTTCACAGCCAATGTGGATTTCGTTGAGCACAAGTGCTTGTGGTTCAGCTCTTGGCTCGTCCCAACCTTCATGTAGACCATGGGAAAGGGGTGACCTTCTTAGACGACTGTCCACATTCAGGCCTGCAAATTGGTTTGGAAAGCCTAAGGCTGCTAGCTCACTTGCCTGTGCTAGAAGAGGGTGGGTGAATGTGGATGTTGATAAGATTCAGTGTGAGTCTTGTGGTGCAAACCTGAAATACAATGCACCGGATTCACATGCTCATACGGAAGGTGAAAATGGTGAAGAATTTGCCAATCAGCTCGATGAAGGACACAATGTCACATGTCCATGGAGAGGAAACAGCTGTGCAGAAAGTTTAGTGCAGTTCCCACCTACTCCTCCATCAGCCCTTATCGGGGGTTACAAGGACCGTTGTGATGGACTCCTTCAGTTTCCGTATCTACCTGTTGTGGCTGCTTCTGCCATTGAGCAGATGAAGCTTTCTAGAGGTCCAGAAATCGACCGCTTTCTGGTTCAGTCATCTGGTTTTTTAGTAGATGTTGCATCTGATTTGGAGATAAGCTTATATTCACGTGCCCAGAAGTTAATAAGCCTTTGTGGATGGGAGCCGAGGTGGCTTTCAAATGTTCAAGACTGTGAAGAACATTCTGCTCAATCTGCTAGGAATGGGGCTTCTTTCAGTCCAATTAAAGATGACAGAAATCGTAACAAGAAACTTATGTCTGCTTCAACCAAAAAAATTCCTCGGGCCCCATCAAAGTTTGAATCTAGATCACCACTGTTGGATTGCAGCTTATGTGGCGCCACAGTGAGAATCTTGGATTTTATTCGAGTTAATCGTCCAGCTCGTTTTGCTCCTAACAACAGCGATGTTCCTGAAACAAGTAAAAAGATGGCACTTACTCGTGGGGTAAGTGCTGCTAGTGGAATTAGTGGGTGGGTGGCAGATGGTGGTGGGGAGAAAGAGCAAACAGAAGACATTGATGAAGCTGCAACCGCCGGAGACGGGAAGTCGATGTCGAATATTAGGGTTGATTTAAATCTCACAATGGGAAGTGGGTTTCCTACGGGACACGGGAACAAGAGACCAATATCTGAACTATACCAAGAAGTAAATATAGGAACGGATTTAGTCATTGGGCAGCCAGCTGGCAGTGAGGTCGGCGATCGGGCACAATCATTTGAATCCCGAGGTCCTACTACTTTTAAAAGGAACATGGATGAAGGTGGGTCTACTGTCGATAGGCCACAAGGGATAATTCGTCAGGCGGATAGTGTTGAAGGTGTTGTTATTGACCGTGATGGCGATGAAGTAAATGATAGCAAGATGTCCCCGGGGCCATCTAAACGTGCGCGTGAGTCTCATGCCTTTGAACACTTTGAACCATCGTCTGGTGCGGGCCCTAGCCAAACATTGTATTTCGATATTGGAAGGGCGGGTCCTTCAAGTCAAGGCAATGAACTGACGGGCCGAGCTTCATCTGTTATAGCAATGGATACAGTTTGTCGCAGTGACGATAGCAATTCTATGGAAAGTGTTGAAAATCATCCGGGTTTTATTGATGAGGTCAATTACCCATCTGGGTCAGGAGTCAAAAGCCCAGATGTTAATGATAATTCTGATTTAAACGTTAGTATTCAGGCTCAGCAAAGTGTGTGCCCGCCTGCGGTTCATGTCACAGGTGAGATAGGTGTTAGCAGCACCAATGATGAAGAAGTACTGAACACTGATGCTACCACAATTCAAGGGCGGGATGGTCCTAGTTTTGCTATTAGTGGTGGTAGTGTTGGTATGGGTGTGAGTCATGAAGCTGAGATTCATGGCTCTGATGCTTTGATTCATAGGACGGAAAGTGTTGTCGGTGACATGGAACCTGTTACTGGTGTGACGGAAAATCAAGGTCAAACTGGGGAATTTGTTCCGGAGGAAGTGCAACAAGAATGTTCTGGAAGGGCAGATAGTGGGTCAAAGATTGTTGGTTCGGTCAAGGCGGAATCTGTTGAGAGTGGTGACAAGACCAGTGATTTGAATCTTTTGCCACATGAGCAGAGTGATCATCTGGGGCTTTCTTGCAACGCTGTTGTGTTTTCTGGGATTGAAGCTTCAAAGTATGAAGTGACACAGGTGGGGAAGTCGTCTCCTTATGATGAATGTGGCTACCCAAGTTATCCGCCTGTAAACGGTATAGGGCCTCCAAATGGAGAAAGCAACTTTGAAGAAGCAGTTGAGTTGGATCCAATCAAGCATCATAATTTCTTCTGCCCATGGGTGAATGGAAATGTTGCTGTAGCTGGGGTTAGCAACAGCACTAACGGTGCCAGTGCCAGCTCAAGTGTTAGCGGCCTAGCTCTCTGTGGCTGGCAGCTGACTTTGGATGCTTTAGATGGCTTCCAAGGACCTGAACAAAATCAAACTGTGGAATCCGAATCTGCTGCTTCTCTATACAAGGATGAGCATCAAGTTTCTGGTCGAAAACTCATGGCACGAAACTCCTTCAATAGAAGCCATGGCCATAGCTGA 2703 46.76 MREEGMSSNGDPLLFPNSPPPTAAASSAGASSPAFATNAGSADWLGHGQGSKAGSLSRISSQPMWISLSTSACGSALGSSQPSCRPWERGDLLRRLSTFRPANWFGKPKAASSLACARRGWVNVDVDKIQCESCGANLKYNAPDSHAHTEGENGEEFANQLDEGHNVTCPWRGNSCAESLVQFPPTPPSALIGGYKDRCDGLLQFPYLPVVAASAIEQMKLSRGPEIDRFLVQSSGFLVDVASDLEISLYSRAQKLISLCGWEPRWLSNVQDCEEHSAQSARNGASFSPIKDDRNRNKKLMSASTKKIPRAPSKFESRSPLLDCSLCGATVRILDFIRVNRPARFAPNNSDVPETSKKMALTRGVSAASGISGWVADGGGEKEQTEDIDEAATAGDGKSMSNIRVDLNLTMGSGFPTGHGNKRPISELYQEVNIGTDLVIGQPAGSEVGDRAQSFESRGPTTFKRNMDEGGSTVDRPQGIIRQADSVEGVVIDRDGDEVNDSKMSPGPSKRARESHAFEHFEPSSGAGPSQTLYFDIGRAGPSSQGNELTGRASSVIAMDTVCRSDDSNSMESVENHPGFIDEVNYPSGSGVKSPDVNDNSDLNVSIQAQQSVCPPAVHVTGEIGVSSTNDEEVLNTDATTIQGRDGPSFAISGGSVGMGVSHEAEIHGSDALIHRTESVVGDMEPVTGVTENQGQTGEFVPEEVQQECSGRADSGSKIVGSVKAESVESGDKTSDLNLLPHEQSDHLGLSCNAVVFSGIEASKYEVTQVGKSSPYDECGYPSYPPVNGIGPPNGESNFEEAVELDPIKHHNFFCPWVNGNVAVAGVSNSTNGASASSSVSGLALCGWQLTLDALDGFQGPEQNQTVESESAASLYKDEHQVSGRKLMARNSFNRSHGHS 900
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00602 900 MobiDBLite consensus disorder prediction 1 34 - -
Chmo15g00602 900 MobiDBLite consensus disorder prediction 444 476 - -
Chmo15g00602 900 MobiDBLite consensus disorder prediction 281 312 - -
Chmo15g00602 900 Pfam C3HC zinc finger-like 86 205 IPR012935 GO:0008270(InterPro)
Chmo15g00602 900 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 898 - GO:0005634(PANTHER)
Chmo15g00602 900 MobiDBLite consensus disorder prediction 20 34 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00602 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
49152 Chmo15g00602 Chmo24g04814
213644 Chmo14g00718 Chmo15g00602
226212 Chmo15g00602 Chmo13g00729
238952 Chmo13g00729 Chmo15g00602
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:34741626 Chmo15g00602 Chmo-Chr15:31878175 dispersed
Chmo Chmo-Chr14:32867083 Chmo15g00602 Chmo-Chr15:31878175 dispersed
Chmo Chmo-Chr15:31878175 Chmo22g04849 Chmo-Chr22:293352544 dispersed
Chmo Chmo-Chr15:31866788 Chmo15g00602 Chmo-Chr15:31878175 tandem
Chmo Chmo-Chr14:32871652 Chmo15g00602 Chmo-Chr15:31878175 wgd