AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00674 ATGTCACTGCTACCAACAACACCGGAAATTGTTCTTATTTCCTCCCCTGATGGCCCAATCACCGCCTACGATCCATACACTGGAGCTGTCTTAGCTCGCTTCAGTGGCAGCAAGTGTCCTCGTAATGGCATCACTGTTATAAGCAGCAATCAGTTTGCTTGTTCACATGTTTCGGACACAGGTGTGGGCTACATTCATTTGTATAACTGGTGGTCTAAGTGTTGTGTGCAGAGTATTAATCTCCCTGAACCTGTAGCTCCACTTGCTGCCACCAATGATGGGTCGTATATATTCTCAGGTGGTGTTTCGGGTCATATTCACTCGGTATTAGTACCTTCAGGTGACCTGATTCGATCAGTTTCGGCGCATGAGAAACCTGTTTCTTGCATTGTGATCAGTTGTGATGAATCATTGGTCATTTCGGGGGGTGATGATGGAACGATTGCAATGATTCCAATACTCTTGCTTCTAGATGTTTCACTTGACACTGAACCTGGATGTTCCAGTTTCACGAGGTTTACAGGACATGAACTATCGGTGACAGGATTAACTACTGGGATGGGTGTTATGATATCCAGCTCACTGGACTGGACTTGCAAAGTGTGGAACATTGCAAAAGGGACTCACCTCCAGACGGTGAAGTTTCAGGGAGAGATGTTGTGCTCGGTGTTGGATCCATCTGAGACCCAGTTGTATGCTGGTGGAATGGATGGAACGATATACAGAAAAGATCTCAAAGTGGAGACAAGGCAACAGGTAGCAAGTGGAGGAGAGGTGGTGGTATGGGGCAGGAAGCACGACGGAGCAGTGGTGGCAATGGACATGTTGAATTATGGGCAGAGTTTGTTGACAGTTTCAGAGAACGGGCAAATTCATGTGTGGGAAGCAGAGGGTGGTAAGATGACAAGTAGTTTTCGTGAGAAGATCGGAAGCGTGAGTGGAGTACTTGTGGTGAGAGATTGCAGCATTTTGGGGACAAAAGAGATTAAAAGTAAGGGATGTGGCAGCGAAACGGAGGTTGGTATGGCAACAACAGATGTGGCGGAGATGGAAGAAGCTTTGAGAGTGGTGGTAGAAGACCGGGGCAGAGCGACTACTAACCTTGAATCAGCAATTGAAATTCACAAAAAGCTGATGGAACTCATGCTCAAGGAAGCCAATGCGATTGCAAATTTGAAGAGTCCATTAGGAAACAGATGA 1200 46.5 MSLLPTTPEIVLISSPDGPITAYDPYTGAVLARFSGSKCPRNGITVISSNQFACSHVSDTGVGYIHLYNWWSKCCVQSINLPEPVAPLAATNDGSYIFSGGVSGHIHSVLVPSGDLIRSVSAHEKPVSCIVISCDESLVISGGDDGTIAMIPILLLLDVSLDTEPGCSSFTRFTGHELSVTGLTTGMGVMISSSLDWTCKVWNIAKGTHLQTVKFQGEMLCSVLDPSETQLYAGGMDGTIYRKDLKVETRQQVASGGEVVVWGRKHDGAVVAMDMLNYGQSLLTVSENGQIHVWEAEGGKMTSSFREKIGSVSGVLVVRDCSILGTKEIKSKGCGSETEVGMATTDVAEMEEALRVVVEDRGRATTNLESAIEIHKKLMELMLKEANAIANLKSPLGNR 399
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00674 399 PANTHER WD-REPEAT PROTEIN 18 8 323 IPR045227 GO:0005656(PANTHER)|GO:0006261(PANTHER)|GO:0006364(PANTHER)|GO:0097344(PANTHER)
Chmo15g00674 399 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 10 300 IPR011047 -
Chmo15g00674 399 ProSitePatterns Trp-Asp (WD) repeats signature. 190 204 IPR019775 -
Chmo15g00674 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 212 IPR001680 GO:0005515(InterPro)
Chmo15g00674 399 SMART WD40-4 166 203 IPR001680 GO:0005515(InterPro)
Chmo15g00674 399 SMART WD40-4 113 152 IPR001680 GO:0005515(InterPro)
Chmo15g00674 399 SMART WD40-4 206 244 IPR001680 GO:0005515(InterPro)
Chmo15g00674 399 SMART WD40-4 256 295 IPR001680 GO:0005515(InterPro)
Chmo15g00674 399 SMART WD40-4 72 110 IPR001680 GO:0005515(InterPro)
Chmo15g00674 399 Gene3D - 5 160 IPR015943 GO:0005515(InterPro)
Chmo15g00674 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515(InterPro)
Chmo15g00674 399 Gene3D - 161 326 IPR015943 GO:0005515(InterPro)
Chmo15g00674 399 Pfam WD domain, G-beta repeat 171 203 IPR001680 GO:0005515(InterPro)
Chmo15g00674 399 Pfam WD domain, G-beta repeat 115 148 IPR001680 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00674 K14829 pre-rRNA-processing protein IPI3
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Event-related genes

Select Gene_1 Gene_2 Event_name
226235 Chmo15g00674 Chmo13g00796
238975 Chmo13g00796 Chmo15g00674
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:39363500 Chmo15g00674 Chmo-Chr15:37544870 dispersed
Chmo Chmo-Chr15:37544870 Chmo16g02207 Chmo-Chr16:112444099 dispersed
Chmo Chmo-Chr15:37520239 Chmo15g00674 Chmo-Chr15:37544870 proximal