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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00681 ATGACATCGGCAAGGATGCCGACGTGGAAGGAGAGGGAGAATAATAAGAGGAGAGAAAGGAGAAGAAGAGCGATTGCTGCGAAAATATTCATGGGGCTAAGAATGTACGGGAATTATAAGCTGCCTAAACATTGTGATAACAATGAGGTTCTTAAAGCATTGGCTGATGAGGCTGGATGGACCGTTGAACCTGATGGCACAACTTATCGTAAGGGAAGCAAACCTTTGGAGCGAATGGACGTTGGTGGATCTGCATCAGCAAGCCCATGTTCATCTTACCAACCAAGTCCGTATGCCTCGTATCACCCGAGCCCCCCATCCTCAGCAATAGCGAGCCCATCCTCAGCAATAGCGAGCCCATCCTCATCCTCTTACACCACACACCCTGACTCACTTATCCCATGGCTCAAGAATCTTTCATCATCATCCTCATCATCATACTCAGCCAAGCTTCCACATCTTTACTTCCACACCGGGTCCATTAGTGCACCAGTGACCCCACCCATGAGCTCTCCAAAGGTTCGGTCCCCGCCATGTGAACCTCATTCTGAATGGTTCACTGGTATTCGCCCCACCTCGCCAACTTTTAGTCTTGTAGCATCAAATCCATTTGGGTTCAAGGAAGCGGTTGTATCTAATGGTGGGTCACGAATGTGGACCCCTGGACAAAGTGGGACATGCTCTCCTGCAATTCCTTCAGGGTTGGATAACAGTGCCGATATACCAATGGCGGAAGTAGTTTCTGATGAATTTGCATTCGGTAGCAATGCGGGTGGGAGGGTAAAGCCATGGGAAGGAGAAAGGATCCACGAGGTTTTTGGGTCTGATGATCTTGAGCTTACTCTTGGAAGTTCAAAAACCAGACGTGTGGACTTGAATTGGTTTCAGAGCAAGGTTCAAAAGTCGATTACAACAGGTTCAAGCAGTCGACTATCAATAGAAGGGTTTCCAAAATCGACTATCAGCAGCAGGTCTTGA 978 48.06 MTSARMPTWKERENNKRRERRRRAIAAKIFMGLRMYGNYKLPKHCDNNEVLKALADEAGWTVEPDGTTYRKGSKPLERMDVGGSASASPCSSYQPSPYASYHPSPPSSAIASPSSAIASPSSSSYTTHPDSLIPWLKNLSSSSSSSYSAKLPHLYFHTGSISAPVTPPMSSPKVRSPPCEPHSEWFTGIRPTSPTFSLVASNPFGFKEAVVSNGGSRMWTPGQSGTCSPAIPSGLDNSADIPMAEVVSDEFAFGSNAGGRVKPWEGERIHEVFGSDDLELTLGSSKTRRVDLNWFQSKVQKSITTGSSSRLSIEGFPKSTISSRS 325
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00681 325 PANTHER BES1-BZR1 HOMOLOG PROTEIN 3-RELATED 1 289 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Chmo15g00681 325 MobiDBLite consensus disorder prediction 305 325 - -
Chmo15g00681 325 MobiDBLite consensus disorder prediction 1 20 - -
Chmo15g00681 325 MobiDBLite consensus disorder prediction 63 123 - -
Chmo15g00681 325 Pfam BES1-BZR1 plant transcription factor, N-terminal 3 140 IPR008540 -
Chmo15g00681 325 MobiDBLite consensus disorder prediction 85 123 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00681 K14503 brassinosteroid resistant 1/2
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Event-related genes

Select Gene_1 Gene_2 Event_name
49162 Chmo15g00681 Chmo22g04908
49163 Chmo15g00681 Chmo23g04856
226236 Chmo15g00681 Chmo13g00806
238976 Chmo13g00806 Chmo15g00681
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:38042266 Chmo15g04406 Chmo-Chr15:279957847 dispersed
Chmo Chmo-Chr13:40091230 Chmo15g00681 Chmo-Chr15:38042266 wgd
Chmo Chmo-Chr14:34904015 Chmo15g00681 Chmo-Chr15:38042266 wgd
Chmo Chmo-Chr15:38042266 Chmo22g04908 Chmo-Chr22:295737856 wgd
Chmo Chmo-Chr15:38042266 Chmo23g04856 Chmo-Chr23:287750808 wgd
Chmo Chmo-Chr15:38042266 Chmo24g04915 Chmo-Chr24:293427884 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chmo23g04856 ACH,CSH 1 325 BZR Transcription Factor family AT1G78700 65.244 3.92e-111 323.0
Chmo5g03316 CSH 22 335 BZR Transcription Factor family AT1G75080 60.976 1.10e-101 300.0
Chmo16g01824 ACH,CSH 22 335 BZR Transcription Factor family AT1G75080 53.583 7.01e-85 256.0
Chmo15g00681 ACH,CSH 1 325 BZR Transcription Factor family AT1G78700 64.848 8.45e-106 310.0
Chmo24g04915 CSH 1 325 BZR Transcription Factor family AT1G78700 65.549 8.98e-112 325.0
Chmo13g00806 ACH,CSH 1 325 BZR Transcription Factor family AT1G78700 65.538 2.92e-108 317.0
Chmo6g02850 CSH 22 335 BZR Transcription Factor family AT1G75080 60.976 1.10e-101 300.0
Chmo4g03503 ACH,CSH 22 335 BZR Transcription Factor family AT1G75080 60.976 1.10e-101 300.0
Chmo15g04406 CSH 1 325 BZR Transcription Factor family AT1G78700 69.817 3.21e-128 367.0
Chmo8g03592 CSH 23 334 BZR Transcription Factor family AT1G75080 61.538 1.87e-106 311.0
Chmo9g03506 CSH 23 334 BZR Transcription Factor family AT1G75080 61.538 1.68e-106 311.0
Chmo13g04681 ACH,CSH 1 325 BZR Transcription Factor family AT1G78700 69.817 3.21e-128 367.0
Chmo14g04620 ACH,CSH 1 325 BZR Transcription Factor family AT1G78700 69.817 3.21e-128 367.0
Chmo14g00768 ACH 1 325 BZR Transcription Factor family AT1G78700 65.538 5.79e-109 317.0
Chmo22g04908 ACH,CSH 1 325 BZR Transcription Factor family AT1G78700 65.549 1.31e-110 322.0
Chmo7g03421 CSH 23 334 BZR Transcription Factor family AT1G75080 61.538 1.87e-106 311.0
Chmo17g01668 ACH,CSH 22 335 BZR Transcription Factor family AT1G75080 53.583 7.01e-85 256.0
Chmo18g01626 ACH,CSH 22 335 BZR Transcription Factor family AT1G75080 53.583 7.01e-85 256.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chmo BES1_N 4.1e-58 No_clan TF BES1