AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo15g00688 | ATGGAACAACCACTTAATCAATCAGCTCTAACTCTTGCCCCAAACAAGAGCAAACTGGCCCGAACTTTCGCGAAAGTCTTGCATACCCGAGCTGCAACTCTTGACAAAACTCGAAAAACAAAGTCAAGTGAAAAAACCAAACATGACATTGACCACGAGAAGATTAGAAACCAAGCTGCAATGGATGCGTTTATTGCCAAAGTGTTTGCTACTATCTCATCAGTTAAAGCTGCATATGCTCAGTTGCAATATGCTCAGTCTCCTTATGATCCTGATGGTATTCAGTCAGCTGATCAGATCATGGTATCTGAACTAAAAACATTATCTGAATTCAAACAGCTATTCATCAAGAAACATCTTGACAACAACGAAAAAGCCCCTGAAACCATTCAGCTACAAGCCGAAATCCAAGAACAGAAAAACCTGTTACAAATGTATGAAATAACCACGAAAACATTAGACAGTCAGAAGAAGCTCAAAGATTCAGAGATCATTTTCTTAAAAGAAAAACTCGAAGAAGCGAATAAAGAAAATAAGATTACTGAAAGAAGGTTAAACTCTAGTGGACCGATATCGCCTCAGGAGAAACTTAGCTTATTGTCATTAAGTCCAAAAAGTTTCGTATGGTGTCTTCAGCAAACGAGGAAGTCTGTTACTAGTTTTGTGAAGTTGATGATGAGTGAAATGGATGAAGCGAATTGGGATTTAAATGCAGCTGCTAGTTCCATCCAACCAGATGTTATATATCGGGACACTACTCATATATGTTACGCATTCGAGTCTTTTGTTTATCAGGTTATGTTCGATGGGTTCAACGAGTCAAATGTCTCGAGTTCAAGTCAATATTTTTTCGAGAAGTTTATGGAGTTAAAGTCTATAAAAGCAAGTGAATACCTTAAATGGAAACCTAGCTCGACATTTGCTAGATTTTGTTACTCTAAGTATTTACGACTCGTTCACCCGATAATGGAATTCGCTCTTTTCGGGAACTTGAACCAAAGGAACCTAGTGGGTGCCGAAAAAACCCCGGAAACAGCCTTTTTTAACTCGTTTGCTGAAATGGCTAAGCGCGTTTACCTCCTACATTGTCTAGCATTCGCGTTTGATCCAAGCAAGGCCTCGGTCTTTCAAATCCGAAAAGGGAGCCGGTTTTCGGAAGTGTACATGGAAAGTGTGAATGAAGAACCGGTAAAAAGCTCTCCAGAAGTGAGTTTTACTGTGGTTCCAGGGTTTAAAATGGGTAAAACTGTTATACAATGTCAAGTGTATTTGACATGA | 1278 | 39.2 | MEQPLNQSALTLAPNKSKLARTFAKVLHTRAATLDKTRKTKSSEKTKHDIDHEKIRNQAAMDAFIAKVFATISSVKAAYAQLQYAQSPYDPDGIQSADQIMVSELKTLSEFKQLFIKKHLDNNEKAPETIQLQAEIQEQKNLLQMYEITTKTLDSQKKLKDSEIIFLKEKLEEANKENKITERRLNSSGPISPQEKLSLLSLSPKSFVWCLQQTRKSVTSFVKLMMSEMDEANWDLNAAASSIQPDVIYRDTTHICYAFESFVYQVMFDGFNESNVSSSSQYFFEKFMELKSIKASEYLKWKPSSTFARFCYSKYLRLVHPIMEFALFGNLNQRNLVGAEKTPETAFFNSFAEMAKRVYLLHCLAFAFDPSKASVFQIRKGSRFSEVYMESVNEEPVKSSPEVSFTVVPGFKMGKTVIQCQVYLT | 425 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo15g00688 | 425 | PANTHER | PROTEIN GRAVITROPIC IN THE LIGHT 1 | 17 | 424 | IPR040225 | GO:0009639(InterPro)|GO:0009959(InterPro) | |
| Chmo15g00688 | 425 | Pfam | Plant protein of unknown function (DUF641) | 57 | 184 | IPR006943 | - | |
| Chmo15g00688 | 425 | Coils | Coil | 157 | 184 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo15g00688 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr15:38556975 | Chmo24g04855 | Chmo-Chr24:291824631 | dispersed | |
| Chmo | Chmo-Chr15:6458755 | Chmo15g00688 | Chmo-Chr15:38556975 | transposed | |
| Chmo | Chmo-Chr23:108999908 | Chmo15g00688 | Chmo-Chr15:38556975 | transposed | |
| Chmo | Chmo-Chr24:1834080 | Chmo15g00688 | Chmo-Chr15:38556975 | transposed | |
| Chmo | Chmo-Chr25:217835224 | Chmo15g00688 | Chmo-Chr15:38556975 | transposed | |
| Chmo | Chmo-Chr24:1834904 | Chmo15g00688 | Chmo-Chr15:38556975 | transposed | |
| Chmo | Chmo-Chr1:102143960 | Chmo15g00688 | Chmo-Chr15:38556975 | wgd | |
| Chmo | Chmo-Chr13:40442133 | Chmo15g00688 | Chmo-Chr15:38556975 | wgd | |
| Chmo | Chmo-Chr14:34704466 | Chmo15g00688 | Chmo-Chr15:38556975 | wgd | |
| Chmo | Chmo-Chr15:38556975 | Chmo2g01856 | Chmo-Chr2:86762988 | wgd | |
| Chmo | Chmo-Chr15:38556975 | Chmo22g04927 | Chmo-Chr22:296477098 | wgd | |
| Chmo | Chmo-Chr15:38556975 | Chmo23g04884 | Chmo-Chr23:288914769 | wgd | |
| Chmo | Chmo-Chr15:38556975 | Chmo3g02050 | Chmo-Chr3:95055392 | wgd |