AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00759 ATGGCCGAAGAATACTCTCTAGCTGATACTTCAAAGCTTCTTCAAGCAGCTTCTGATTTTTCCTTTGATCCTGGTACTCGATCAGAAGCTGCTGTTAAGGAATTTCTTAGCTCTTTTCCCCTTCCTCTTATTATCAATGCTTTGCAAACAAAAGGAGATGTGCCTGGTTTGGAGGACGCACTGATTGATTGTTTAGAGAAGATATTTAGAACAAAATATGGGGCCTCTCTCATCCCACATTTCATGCCTTTCATCGTGGTCGGCCTGCAAGCATACTCTCAGAGAGTCAAAAATTTGTCGTGCAAAACGGTCTCAAGCCTTTTGGAGAATCTTGAAGACAATACTGGCTTAGCTACTTCACTGATCAAAGAGAATGGTGTGTATCCCCTTCTGCTTAATTGTCTCATTGACGGTGATGAACAAGTGGCTGTTGCTGCAACAGAAGCGATCAGAAATTTAGCGCGCTCTCAACAGGGGATAGAGATCATATTCCCGGCTACTCCCGATGAAAGCACAGATATTACAAAGCTAGCAGCAAGATGTTCTTCACTGGGACGAGTACGCGTTTTAGCATTGATAGTGAAACTATTTTCTGCTTCAAGTGCAGCTGCAACATTAGTTCACAACTCAAATCTTCTTGGTCTCTTGGAGGCGGAAGTTCGCAATGCTAATGATACACTTATAACTTTGAGTGTTTTGGAGCTCCTTTATGAGTTGGCTGAGGTCCATCATGGAATGGAATATGTACTTGGGACGAATATCTTGCAGCTACTTATTTCAATAATCAGGAATTCTTCTTCTGAATCAATGTTGAGATCAAGGGCAATGATGATAAGTGGGCGGCTGTTATCGAAAGAGAACGTTTTCACGTTTATAGATGAATCTGGTGTTAAAGCTGTGATTTCAGCTATTGATGAACGGCTTTCATTACTAGATAGTCAAGATGCAGATGAATGTGAATGTGGTCTTGAAGCCTTAGGTCAAATAGGGTCATCAACTAAAGGAGCTGCATTGCTACTTTCAAACACATCTGCTGCTAAACATGTTGTTAACACTGCTTTTAACTTACATGGTCGTGGCAGACAACTGGCAGCATTGCATTCTCTTGGGAACATTGCAGGAGAAACTCTGCCCGAGGAAAACAAGTTGCTGAATGCTGATGCCGAAGAAATCCTTCGTAAATTGGTTTATGAAACAGCATCCAGCACTCCAAAGCTCATACCTTCGGGTCTTGTTCTTGCAATTCTTAAACTCGAGACTGAATTTCGGATCGCGGGTTATAGGTTGATAACAGGATTGGCTGCTAGACCATGGTTTCTGGTGGAAATCTGTTCCAGACAAGAGATAATAAACATATTGACAGATTCATATACGGAAACAACTAAAATAGGGATGGAGGCCAAATTCAACTGTTGTGAGGCGATTTATAAAGCTATTGCATTCTCGCCTAAACTTCTTGGTGATCCAGCTCTTTCTGAGACAGCAGAAAAGCTTTCGGAAGCTATTAAAAAGGGCCCTTATCTTGCCAAAGGACGACAACGTGAAGCACAACCTGAAGTCGCAACTGCTGATAGATTTTAG 1581 41.87 MAEEYSLADTSKLLQAASDFSFDPGTRSEAAVKEFLSSFPLPLIINALQTKGDVPGLEDALIDCLEKIFRTKYGASLIPHFMPFIVVGLQAYSQRVKNLSCKTVSSLLENLEDNTGLATSLIKENGVYPLLLNCLIDGDEQVAVAATEAIRNLARSQQGIEIIFPATPDESTDITKLAARCSSLGRVRVLALIVKLFSASSAAATLVHNSNLLGLLEAEVRNANDTLITLSVLELLYELAEVHHGMEYVLGTNILQLLISIIRNSSSESMLRSRAMMISGRLLSKENVFTFIDESGVKAVISAIDERLSLLDSQDADECECGLEALGQIGSSTKGAALLLSNTSAAKHVVNTAFNLHGRGRQLAALHSLGNIAGETLPEENKLLNADAEEILRKLVYETASSTPKLIPSGLVLAILKLETEFRIAGYRLITGLAARPWFLVEICSRQEIINILTDSYTETTKIGMEAKFNCCEAIYKAIAFSPKLLGDPALSETAEKLSEAIKKGPYLAKGRQREAQPEVATADRF 526
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00759 526 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED 1 526 IPR019538 GO:0005829(PANTHER)|GO:0043248(InterPro)
Chmo15g00759 526 Pfam Proteasome non-ATPase 26S subunit 104 521 IPR019538 GO:0043248(InterPro)
Chmo15g00759 526 SUPERFAMILY ARM repeat 41 482 IPR016024 -
Chmo15g00759 526 Gene3D - 6 405 IPR011989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00759 K06692 26S proteasome non-ATPase regulatory subunit 5
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Event-related genes

Select Gene_1 Gene_2 Event_name
213659 Chmo14g00841 Chmo15g00759
226256 Chmo15g00759 Chmo13g00860
238996 Chmo13g00860 Chmo15g00759
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:44374478 Chmo15g00759 Chmo-Chr15:43702179 wgd
Chmo Chmo-Chr14:40687557 Chmo15g00759 Chmo-Chr15:43702179 wgd