AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00780 ATGACTGGACTGTCATTGGATATAAGAACACAGAGTTATGCATCACCTCAGCAGCCGCAGAATGGTTCATTGCAGACTCAAAATGGGTTCATTGTACGCAAGTCTTCGAGGATGTCATTGTCTGGTTCGAGAGAGAAGGATAGATTTCTTACATTTTTGTGCAGATATTTAAGTAGAAAGAAGGTTGTAATGATGATTTTAATGTCATTTGCTCTCATGGCTTTCTTGTCGGGGTTCTTTACCTCCAATAGAGAAGCTGCATCAGAGCGCACGATCTTCAATCCCTTTAACGAGACATTTAATACCTCTTTCCAGTTTGCTAGATTTGATAATCAGAAATACAATAATTCTTCCATGGAGACAACTCTGTCTGTATGTGAAGTGAACCCCCCTACCCGTCGTTATTCGGATGCATCACTTTCTACAGGATCCGTTATTTCTCATAGCAATTTGTGTAAGAATTTTGCATTTCCTCCTCCTCCTCCAGGTGATAGGAGACGACCTGGACCTCGACCTTGTCCTGTATGTTACCTTCCAGTGGAGGAGGCTATGGCTAGCATGCCGAACTCACCGTCACCATCACCGGTGCTTCATGAGTTAAGCTATTTCCATGAGGGGACATCTACTAAAACTGAACCACATGAAGGCTCTGACTTTGGTGGGTATCCTTCCTTAAAGCAAAGGAATGAATCTTTTGATATTAAAGAATCCATGGCTGTGCATTGTGGATTTGTAAAAGGATGCAGACCTGGTTACCAAACTGGATTTGATATTGATGTATCTGATCTTGTGGAGTTGGAGCAGTATCATGATATCATTGTTGCATCGGCCATATTTGGAAACTATGATGTAATTCAACAGCCAACTAAAATTAGCGAGGCTGCAAGTAGAAACATTCCGTTTTATATGTTTATTGATGAAGAGACTGAAGCATATATGAGAAACTCTAGTGCTTTGGACTACAGAATGAAGGTTGGATTGTGGAGAATTATTGTTGTGCACAACATACCTTACACTGATTCGAGACGCAATGGAAAGGTCCCCAAGCTTCTACTACACAGACTCTTCCCAAATGTCCGGTATTCTATATGGATCGATGGGAAGCTGCAACTCGTTGTGGACCCATATCAACTTCTAGAGAGGTTCTTGTGGCGCAACAATGCGACTTTTGCAATTTCAAAACATTATAGGCGATTTGATGTGTTTGAAGAAGCTGAAGCTAATAAGGCTGCCGGGAAATACGACAATGCGTCCATTGATTACCAGATTGATTTTTACAGAAATGAGGGTTTAACACCATATTCTGAAGCTAAGCTTCCCATAATCAGTGATGTTCCTGAAGGGTGTGTAATCATACGGGAACACATTCCGATAACAAATCTCTTCACGTGTTTGTGGTTCAATGAAGTTGACCGCTTTACTTCAAGGGATCAGTTAAGTTTTGCTATTGTAAGGGACAAAATTATGGCTCAAGTCAACTGGAGCATCAATATGTTTATGGATTGTGAAAGACGGAACTTTGTGATACAGGCATACCACCGGGATCTACTAGAGCATATGCCACCTCCTGCACCTAAAGTGATTAATTTAAGGCGGACCCGATCTCCTATTCCTGTTCCTGTATCTGTGCGAGTTAATTCACCTGCTAGATATTCAGTAAAGAAAAACCCTGTTCGACGGAAAGGTGAAAGGAGACCTCGTTCAAGGAGGCATCCAAAAAATCCCAGTAATAGGGACAACACGGTCTTTTGA 1752 41.55 MTGLSLDIRTQSYASPQQPQNGSLQTQNGFIVRKSSRMSLSGSREKDRFLTFLCRYLSRKKVVMMILMSFALMAFLSGFFTSNREAASERTIFNPFNETFNTSFQFARFDNQKYNNSSMETTLSVCEVNPPTRRYSDASLSTGSVISHSNLCKNFAFPPPPPGDRRRPGPRPCPVCYLPVEEAMASMPNSPSPSPVLHELSYFHEGTSTKTEPHEGSDFGGYPSLKQRNESFDIKESMAVHCGFVKGCRPGYQTGFDIDVSDLVELEQYHDIIVASAIFGNYDVIQQPTKISEAASRNIPFYMFIDEETEAYMRNSSALDYRMKVGLWRIIVVHNIPYTDSRRNGKVPKLLLHRLFPNVRYSIWIDGKLQLVVDPYQLLERFLWRNNATFAISKHYRRFDVFEEAEANKAAGKYDNASIDYQIDFYRNEGLTPYSEAKLPIISDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFAIVRDKIMAQVNWSINMFMDCERRNFVIQAYHRDLLEHMPPPAPKVINLRRTRSPIPVPVSVRVNSPARYSVKKNPVRRKGERRPRSRRHPKNPSNRDNTVF 583
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00780 583 MobiDBLite consensus disorder prediction 550 583 - -
Chmo15g00780 583 PANTHER ALKALINE CERAMIDASE-RELATED 36 540 IPR006852 -
Chmo15g00780 583 MobiDBLite consensus disorder prediction 1 28 - -
Chmo15g00780 583 MobiDBLite consensus disorder prediction 554 572 - -
Chmo15g00780 583 Pfam TOD1-MUCI70, glycosyltransferase-like domain 200 513 IPR048354 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00780 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:44738793 Chmo15g04574 Chmo-Chr15:287488144 dispersed
Chmo Chmo-Chr13:46087512 Chmo15g00780 Chmo-Chr15:44738793 wgd