Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chmo15g00784	ATGAGCGGCGAACCAGACTGTAGTAGATTGGATCGGGTCATTTTCATGTCAACCAAATCAGCAATTCTACATGCTGCCGCCGTTGCGACGGCATTAGCGGGTGGTTACTATTACTACCGTCGATCCGCCACTCTTTTCCGGAGCCGGGTCGTGGGTATAATTCCGGCCCGGTTTGCTTCTTCCCGGTTTGAGGGTAAACCCCTTGTTGAAATACTTGGAAAACCCATGATTCAGAGAACATGGGAGAGAGCAAAATTGGCAACAACATTGGATCGGGTTGTTGTGGCAACAGATGATGATAGGATTGCAGAATGTTGTCGAGGATTTGGTGCTGATGTGATAATGACTGCAGAATCGTGCAGAAATGGTGCTGAAAGGTGTAGTGAAGCACTTCAAAAGCTCGAGAAAAAGTATGATATTGTTGTCAATATTCAAGGAGATGAGCCTCTTATTGAACCTGAAATCATTGATGGGATTGTCAAAGCTCTTCAGACCACCCCAGATGCAGTTTTCAGCACTTGTGTTACATCTTTGAAACCAGAAGATGCTTTCGATCCTAATCGTGTGAAATGTGTGGTTGATAACCGTGGTTATGCAATCTATTTCTCTCGAGGACTGATCCCTTTTAACAAGTCAGGGAAGGTCAATCCTGAATTCCCGTACAATCTTCATCTCGGTATTCAGAGCTATGATTCAGAATTTTTAAAGATTTATCCGGACTTGACACCAACTCCATTGCAACTAGAAGAAGATTTGGAACAACTTAAAGTTCTTGAAAATGGTTACAAGATGAAGGTAATAAAAGTAGATCATGATGCTCATGGTGTTGATACTCCAGAAGATGTCGCCAAGATCGAAAATTATATGCGCGAAAGGAACTTGTCATAG	888	42.79	MSGEPDCSRLDRVIFMSTKSAILHAAAVATALAGGYYYYRRSATLFRSRVVGIIPARFASSRFEGKPLVEILGKPMIQRTWERAKLATTLDRVVVATDDDRIAECCRGFGADVIMTAESCRNGAERCSEALQKLEKKYDIVVNIQGDEPLIEPEIIDGIVKALQTTPDAVFSTCVTSLKPEDAFDPNRVKCVVDNRGYAIYFSRGLIPFNKSGKVNPEFPYNLHLGIQSYDSEFLKIYPDLTPTPLQLEEDLEQLKVLENGYKMKVIKVDHDAHGVDTPEDVAKIENYMRERNLS	295

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chmo15g00784	295	NCBIfam	3-deoxy-manno-octulosonate cytidylyltransferase	52	282	IPR004528	GO:0008690(InterPro)
	Chmo15g00784	295	CDD	CMP-KDO-Synthetase	49	288	IPR004528	GO:0008690(InterPro)
	Chmo15g00784	295	Coils	Coil	117	137	-	-
	Chmo15g00784	295	Hamap	8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB].	48	290	IPR004528	GO:0008690(InterPro)
	Chmo15g00784	295	PANTHER	3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE	19	294	-	GO:0005829(PANTHER)\|GO:0008690(PANTHER)
	Chmo15g00784	295	Pfam	Cytidylyltransferase	51	263	IPR003329	-
	Chmo15g00784	295	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	50	292	IPR029044	-
	Chmo15g00784	295	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	39	290	IPR029044	-
	Chmo15g00784	295	FunFam	3-deoxy-manno-octulosonate cytidylyltransferase	48	290	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chmo15g00784	K00979	3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	226267	Chmo15g00784	Chmo13g00891
	239007	Chmo13g00891	Chmo15g00784

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Chmo	Chmo-Chr13:73172230	Chmo15g00784	Chmo-Chr15:44796146	dispersed
	Chmo	Chmo-Chr14:66127226	Chmo15g00784	Chmo-Chr15:44796146	dispersed
	Chmo	Chmo-Chr15:44796146	Chmo15g01238	Chmo-Chr15:71570554	dispersed
	Chmo	Chmo-Chr11:266967370	Chmo15g00784	Chmo-Chr15:44796146	transposed
	Chmo	Chmo-Chr13:46120231	Chmo15g00784	Chmo-Chr15:44796146	wgd