AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo15g00786 | ATGGGTGATCAAAAGAATTTAGCAAATATTGATGACTTGCCTTTACATTTGATTCTTGAAATCTTGACATGTGGGTTGGGTGGTGTGGATCTTGTGTGTTTGGAGTTAAGTTGTAAGCTTTTTAGAGATGGGTATGAGTTGGTTCCTGTCAATTTTAAGTCTTTAGGTGAGTTTGCGGCTTTTCGCCTTTGTGGGTCGAATCCGGTTTTTGTTGGTTGGAGTGATGGAGCTAAGGATGAGCTTTTGGCTAGGTGTGGTGGGTGTTGGAAGAGGGGTTTGAGGTTCTTGCAATCGGTTAATGAGTCTTCGGATGTTGTGCAAACGTATTCGGGCAATACGATGCAAATTAGGAGTGGAAGGTATCATACATTACTGATCAAGGATTCAAAGGTTTACTCTTGTGGTTCAAGTTTGTGTGGTGTTCTTGGACATGGTCCTGAAACCACGCAATGTGCTGCATTTACTCGGATTAAGTTCCCATATCATGTCAATGTTACACACGTTTCCGCCTCCCATAATCATGCTGCCTTTGTCACGCAGTCAGGAGAGGTGTTCACTTGTGGTGACAATTCGTCCTTCTGTTGTGGGCATAGTGATACAAACCGTCCAATATTCAAGCCTCGCCTTGTTGAAGCCTTAAAGGATGTTTCTTGCAAGCAGGTTGCTACTGGTGTTAGCTTTACCATGTTTCTCACAACCGATGGCCAAGTATACACATGTGGGACCAACACACAAGGTCAACTAGGCCATGGTGACGCCTTGGATAGATCAACACCGAAACTTGTAGAAGGGCTTGTGACTGTTGGTCCTGTTGTACAGATTGCTGCTGGTCCAAGCTATTCGCTTGCTGTCACAAGCGACGGAACAGTTTATTCATATGGTTCTGGAACCAATTTCTGTCTCGGTCATGGCGAGCAGCACAGTGAACTCAGCCCTCGGCCACTTCAATGGTTTAGGAGAAAAGGCATACATGTGGTTCGTGTGTCTGCTGGTGACGAGCATGTTGTTGCACTCGATTCTAATGGATATGTTTACACATGGGGCAAAGGTTATTGTGGTGCGCTTGGTCATGGTGATGAGATTGATAAAACAACTCCCGAGCTCTTAACCAGCCTCAAAACACACCTCGCTGTTCAGGTGTGCGCAAGCAAGAGGAAGACATTTGTGTTAGTCGATAATGGATGTTTATATGGATTTGGATGGATGGGGTTCGGGAGCTTGGGGTTCCCAGATAGAGGTGTATCCGATAAAGTGTTGAAGCCTAGCAGACTTTACAGTCTAAAGGATCATCATATTTCACAAGTGAGCACAGGTTTGTATCACTCGGTTGTACTCACTAATCGTGGCCGGATATTTGGATTTGGAGACAATGAACGAGGACAACTGGGTCACGATAAGTTAAGAGATTGCCGCAGTGCGACTGAAATATTGGTCGAAGAAACAAGTGGACGTGGTGCATTTCGTCATGGTTGA | 1473 | 45.08 | MGDQKNLANIDDLPLHLILEILTCGLGGVDLVCLELSCKLFRDGYELVPVNFKSLGEFAAFRLCGSNPVFVGWSDGAKDELLARCGGCWKRGLRFLQSVNESSDVVQTYSGNTMQIRSGRYHTLLIKDSKVYSCGSSLCGVLGHGPETTQCAAFTRIKFPYHVNVTHVSASHNHAAFVTQSGEVFTCGDNSSFCCGHSDTNRPIFKPRLVEALKDVSCKQVATGVSFTMFLTTDGQVYTCGTNTQGQLGHGDALDRSTPKLVEGLVTVGPVVQIAAGPSYSLAVTSDGTVYSYGSGTNFCLGHGEQHSELSPRPLQWFRRKGIHVVRVSAGDEHVVALDSNGYVYTWGKGYCGALGHGDEIDKTTPELLTSLKTHLAVQVCASKRKTFVLVDNGCLYGFGWMGFGSLGFPDRGVSDKVLKPSRLYSLKDHHISQVSTGLYHSVVLTNRGRIFGFGDNERGQLGHDKLRDCRSATEILVEETSGRGAFRHG | 490 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo15g00786 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 432 | 461 | - | - | |
| Chmo15g00786 | 490 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 435 | 445 | IPR000408 | - | |
| Chmo15g00786 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 182 | 234 | IPR000408 | - | |
| Chmo15g00786 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 234 | 284 | IPR000408 | - | |
| Chmo15g00786 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 181 | 231 | IPR000408 | - | |
| Chmo15g00786 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 287 | 338 | IPR000408 | - | |
| Chmo15g00786 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 341 | 390 | IPR000408 | - | |
| Chmo15g00786 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 451 | 465 | IPR000408 | - | |
| Chmo15g00786 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 325 | 338 | IPR000408 | - | |
| Chmo15g00786 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 435 | 451 | IPR000408 | - | |
| Chmo15g00786 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 289 | 305 | IPR000408 | - | |
| Chmo15g00786 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 344 | 360 | IPR000408 | - | |
| Chmo15g00786 | 490 | CDD | F-box-SF | 11 | 43 | - | - | |
| Chmo15g00786 | 490 | Gene3D | - | 86 | 268 | IPR009091 | - | |
| Chmo15g00786 | 490 | Gene3D | - | 269 | 485 | IPR009091 | - | |
| Chmo15g00786 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 129 | 181 | IPR000408 | - | |
| Chmo15g00786 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 235 | 287 | IPR000408 | - | |
| Chmo15g00786 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 342 | 393 | IPR000408 | - | |
| Chmo15g00786 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 288 | 341 | IPR000408 | - | |
| Chmo15g00786 | 490 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 109 | 318 | IPR051210 | - | |
| Chmo15g00786 | 490 | SUPERFAMILY | RCC1-BLIP-II | 110 | 411 | IPR009091 | - | |
| Chmo15g00786 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 394 | 448 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo15g00786 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 226268 | Chmo15g00786 | Chmo13g00896 | |
| 239008 | Chmo13g00896 | Chmo15g00786 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr15:45149808 | Chmo1g02892 | Chmo-Chr1:153931991 | dispersed | |
| Chmo | Chmo-Chr13:46585601 | Chmo15g00786 | Chmo-Chr15:45149808 | wgd |