AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00797 ATGATTTCCCCGTCGCTGTTTTCGAACAGTGTTGCGAGGTTTGCGGCGGGGTTTACGGGCTCTGTGACCGCTCTTTCGGCTGTTTGTTTGTTTTACGCTGCGGGGAATATGTTTTATTCATCCGTTGCGCTGCGCTGGGACATGGCGCAACGGATGGTTAATGCGGTACATGACTGGTCTACGGTCAAGACCGTTTTGGATGTCGGGTGTGGCCGGGGGATTCTTTTGAATACGGTCGCGATGCAGCTTAAGAAGGAAGGAAGTTCGGGTCGAGTTGTTGGGTTGGATAGGAAAAACACGACGTTGTCGACTTTAAGGACCGCAGGTATGGAAGGAGTGCAGGAATACGTCACGTGCCGCGAAGGCGACGCGCGACGCCTCCCATTCCCCGACAACTACTTTGACGTGGTTGTATCCGCGACTTTTGTCCACAAAGTGGGCAAAGAATTCGGGACAAAAACCGCGGCAGCATCCGCAGAACGGATGCGCGTGGTAGGCGAGGTAGTCCGAGTACTAAAAGAAGGCGGTGTAGGAGTGGTATGGGACTTGGTACATGTCCCAGAGTATGTACTTCGTTTACAAGAATTAAAAATGGAAGACATAAGAGTGTCGGAAAGAGTAACGGCGTTTATGGTGAATAGTCATATTGTGTCATTTCGTAAGCCCACACAGCACGTGTTGGGCCCCAATGAAGTGAGATTAGATTGGAGATTTAACAATATCTGTTGA 729 50.34 MISPSLFSNSVARFAAGFTGSVTALSAVCLFYAAGNMFYSSVALRWDMAQRMVNAVHDWSTVKTVLDVGCGRGILLNTVAMQLKKEGSSGRVVGLDRKNTTLSTLRTAGMEGVQEYVTCREGDARRLPFPDNYFDVVVSATFVHKVGKEFGTKTAAASAERMRVVGEVVRVLKEGGVGVVWDLVHVPEYVLRLQELKMEDIRVSERVTAFMVNSHIVSFRKPTQHVLGPNEVRLDWRFNNIC 242
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00797 242 Pfam Methyltransferase domain 66 178 IPR013216 GO:0008757(InterPro)
Chmo15g00797 242 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 39 194 IPR029063 -
Chmo15g00797 242 Gene3D Vaccinia Virus protein VP39 23 221 IPR029063 -
Chmo15g00797 242 PANTHER EXPRESSED PROTEIN 7 237 - -
Chmo15g00797 242 CDD AdoMet-MTases 64 184 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00797 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
49216 Chmo15g00797 Chmo16g01092
49217 Chmo15g00797 Chmo17g01003
49218 Chmo15g00797 Chmo18g01065
213670 Chmo14g00866 Chmo15g00797
226276 Chmo15g00797 Chmo13g00913
239016 Chmo13g00913 Chmo15g00797
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:47663217 Chmo15g00797 Chmo-Chr15:45899839 wgd
Chmo Chmo-Chr14:42062250 Chmo15g00797 Chmo-Chr15:45899839 wgd
Chmo Chmo-Chr15:45899839 Chmo16g01092 Chmo-Chr16:46629604 wgd
Chmo Chmo-Chr15:45899839 Chmo17g01003 Chmo-Chr17:42037048 wgd
Chmo Chmo-Chr15:45899839 Chmo18g01065 Chmo-Chr18:45852853 wgd