AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00827 ATGCAGCAACCAAACAAAACCCTGGAATCAGACCTCCCATCACTCGCCACAATCAAAGTCAAATCATCCTCTCCACGTTTCCGATCAACCACCACTTCATCAACCGACACACCAACCGCCGGAGCCCAGCGTCGTATCGGCATCGCAGTCGACTTATCCGACGAGTCCGCATTCGCTGTCAAATGGGCCGTTCACCAATACCTCCGTCCCGGCGACGCCGTGATCCTAATCCACGTCCGGCCCACTTCCGTCCTTTACGGGGCCGATTGGGGCTCCGTCGATTTAGCACTTTCTGACAACGACCCAGATGAGCAAACTAAAGAGAAGCTGGAAAATGACTTTGATTTGTTCACTAGTAATAAAAGTGCTGATATAGCTGGGCCGTTAGTTGAGGCCGGGATACCGTATAAGATACATATAGTGAAGGATCATGACATGAAGGAGAGATTGTGTTTGGAAGTTGAGAGGTTGGGTTTAAGTGCTGTGATTATGGGGAGTAGGGGAGTTGGGAGGATGAGAAGCGGCGAAGGCGACGGGAGGTTAGGGAGTGTTAGTGATTATTGTGTCAGGCATTGTGTTTGTCCTGTTGTCGTTGTGAGGTTTCCTGATGAGAAAGAGGTTGCTCATGAGGGTGGGGCGGTTGTGAAAGTGGCGAAGGGGGGTGATGACGAGGAGGTGGATGAGGATGAGAGTGAGTTTCATGATGCCAGCGATGAGCGGAAATGGTAA 729 51.03 MQQPNKTLESDLPSLATIKVKSSSPRFRSTTTSSTDTPTAGAQRRIGIAVDLSDESAFAVKWAVHQYLRPGDAVILIHVRPTSVLYGADWGSVDLALSDNDPDEQTKEKLENDFDLFTSNKSADIAGPLVEAGIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGVGRMRSGEGDGRLGSVSDYCVRHCVCPVVVVRFPDEKEVAHEGGAVVKVAKGGDDEEVDEDESEFHDASDERKW 242
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00827 242 MobiDBLite consensus disorder prediction 216 242 - -
Chmo15g00827 242 MobiDBLite consensus disorder prediction 21 42 - -
Chmo15g00827 242 PRINTS Universal stress protein signature 178 200 IPR006015 -
Chmo15g00827 242 PRINTS Universal stress protein signature 43 61 IPR006015 -
Chmo15g00827 242 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 44 202 - -
Chmo15g00827 242 MobiDBLite consensus disorder prediction 21 41 - -
Chmo15g00827 242 Pfam Universal stress protein family 44 200 IPR006016 -
Chmo15g00827 242 Gene3D HUPs 32 210 IPR014729 -
Chmo15g00827 242 PANTHER OS01G0783500 PROTEIN 6 241 IPR044162 -
Chmo15g00827 242 CDD USP-Like 45 199 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00827 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
213683 Chmo14g00892 Chmo15g00827
226289 Chmo15g00827 Chmo13g00940
239029 Chmo13g00940 Chmo15g00827
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:166653685 Chmo15g00827 Chmo-Chr15:47115127 dispersed
Chmo Chmo-Chr14:301138361 Chmo15g00827 Chmo-Chr15:47115127 dispersed
Chmo Chmo-Chr15:47115127 Chmo1g03040 Chmo-Chr1:175285214 dispersed
Chmo Chmo-Chr13:48853475 Chmo15g00827 Chmo-Chr15:47115127 wgd
Chmo Chmo-Chr14:43136198 Chmo15g00827 Chmo-Chr15:47115127 wgd