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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00849 ATGAGGATAAAAAACAAAAACAAAACTTCGATACTGTTGCCTGAGAAAGTCTCTACCGATCAGATTCCTCAACAGCCAAATTCTTTTGAAGGTGAAAGTCTTCTATATCTTCTCAACTCAATTCAAAGGGAAATTAAGTTAGCGAGACTAAAAGATGAATCTTTACCTCATAAAATTTGGCTAAAGCAACAATTTTCAATTGGCGTAAATGAGGTGACCCGTGTGCTTGAACGGATGCCACCGGTTATCGGATCAGTAATCGCGACTCCACAAAATGCTACTTTTTGCAGTCGTAATTCTGAATCCCCTTCGCTCCAACTTCAGGCAATACTTATAGCAACTGACTGTAATCCTCGAGGGCTAACAAAGCACCTACCAGTCCTTGCCTCTTCTAGGGAGGTGCCCGTTATCTTTGTAAAAGATAAAAAAGGGGGATCTTTCAAATTAGGTGAAATTGTGAATATGAAGACAGCTATGGCAATTGGAGTTAAGGCTAGAGGAAATTCAATCAACAAACTCATAGGCGAGATTCTTGGAGATAAGAATGTAAATAATGGCGTTGTGGTCGTTGAGTGA 576 39.76 MRIKNKNKTSILLPEKVSTDQIPQQPNSFEGESLLYLLNSIQREIKLARLKDESLPHKIWLKQQFSIGVNEVTRVLERMPPVIGSVIATPQNATFCSRNSESPSLQLQAILIATDCNPRGLTKHLPVLASSREVPVIFVKDKKGGSFKLGEIVNMKTAMAIGVKARGNSINKLIGEILGDKNVNNGVVVVE 191
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00849 191 Pfam Ribosomal protein L7Ae-L30e-S12e-Gadd45 family 107 169 IPR004038 -
Chmo15g00849 191 Gene3D - 41 180 IPR029064 -
Chmo15g00849 191 PANTHER OS07G0636400 PROTEIN 1 183 - -
Chmo15g00849 191 SUPERFAMILY L30e-like 58 169 IPR029064 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00849 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
213688 Chmo14g00910 Chmo15g00849
226294 Chmo15g00849 Chmo13g00963
239034 Chmo13g00963 Chmo15g00849
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1310375 Chmo Chmo15g00849 Chmo-Chr15:48796717 Chmo24g01178 Chmo-Chr24:61972715
1494437 Chmo Chmo13g00963 Chmo-Chr13:50220915 Chmo15g00849 Chmo-Chr15:48796717
1500047 Chmo Chmo14g00910 Chmo-Chr14:44888223 Chmo15g00849 Chmo-Chr15:48796717