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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00859 ATGACTGGCAGACAACTTGAGGTAGAATTAGAGGACCAGTCTCCACATAAATGGCGCGTTCCTTTAAAAGAAGATGTTTTTGCTGCATTTATGGCCAAAGGAGGTCCAATGGTGCATAAGGTTTTTGGTGATAAATCGTTGTTTGGACCATTATTGTTTAAAAAGTTTTTTGATCCATCAGATGCGTTTCCACTTTGGGAATTTGAACCAGGTTTATTGTTGTCTGATCTTCAGAACCCGTGTGTGGATTGGTTTCAAACGGACGGGTGTTATATTTTAAAATCCGAACTACCAACTCGTGTTATTGCAACAGAATTAGAAAAAATCAGCATTCAAGTTTATGTCGACAACGGGAAAGTTATGGAAATCAGTGGGCTATGGAAGCACAAAGGAGAATCCCATGCGGCGGACTGGAGGAGTGGCAAATGGTGGGAACATGGCTTTGTTCGGAGACTAGAACTGCCTGAAAACACAGATTGTAAGAAAATCGAGGCATATGTGAATAATGACACGATTTTGGACATCAGACTTCCAAAGACTTCATTGGAATGCAATGTTCCTCGAGGAAACTAA 573 40.84 MTGRQLEVELEDQSPHKWRVPLKEDVFAAFMAKGGPMVHKVFGDKSLFGPLLFKKFFDPSDAFPLWEFEPGLLLSDLQNPCVDWFQTDGCYILKSELPTRVIATELEKISIQVYVDNGKVMEISGLWKHKGESHAADWRSGKWWEHGFVRRLELPENTDCKKIEAYVNNDTILDIRLPKTSLECNVPRGN 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00859 190 Gene3D - 51 186 IPR008978 -
Chmo15g00859 190 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 3 186 - -
Chmo15g00859 190 Pfam Hsp20-alpha crystallin family 106 182 IPR002068 -
Chmo15g00859 190 SUPERFAMILY HSP20-like chaperones 57 181 IPR008978 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00859 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
213691 Chmo14g00921 Chmo15g00859
226297 Chmo15g00859 Chmo13g00983
239037 Chmo13g00983 Chmo15g00859
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1494443 Chmo Chmo13g00983 Chmo-Chr13:51644172 Chmo15g00859 Chmo-Chr15:49573419
1500052 Chmo Chmo14g00921 Chmo-Chr14:45636658 Chmo15g00859 Chmo-Chr15:49573419