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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00899 ATGGATGCTGAATTTGAAACCATTGAGGCACGATTGCAATCTTTCATTAGTCAATTCCAGTCAGAAGTAGGCGTGCTTGATAGAATCGTCCACAAATATAAGAACCAGCATCGCAGAAGCTCATATTTTCAATACTTGTTGAAGGTGAGGAGAGACTGTAAGCTTCTTCAGTCAACTAACTTGGTGGAACTTGTGAACTCGTCGTTTCTTGTCATTAATGGAAATCGACCTAAGCAAAAGGTGCAGCTTTTGGAAAGTTTGAAGAGAAGAAAATGTGATGGAGGCAAACATAATTTTCTGGGGCGAATTCAGGGTGCCGCACGTCTACTTTCACAGATGGTTGAGCCGATGCTTAAGGCAGCTATAGAGATATCTACCTTGCTTGCTCGATCCTTTTTTATGGGATTTTCTATGACTGTGCTGGCTCTGCTGGCACGCCTTCGAGTTTTGACACAACAAATATTACTTGATGTTGTGTCCGCATTCAACATGGTTTCCTCTCTATCTCGTAAACAGCAGTCCATCAAACTGAACCAAGAAGGAATCGAGGTTTTTAGAGAGTATTACCCAACAAATGAGCACACTGTCTTTTTGGAGTGTGTGTGGGAAACTGATAAATTCATTTTACTTGAGAGGAAGAGTGAACCCGAGAACAAAAATCCAGATACCATAAAGGAAGATTTCATATGTCGAGGTTCATCTACAGTAGAGTATCAAAGCGTCGAAACTATTCTTGGAGAGCATAAACCCATGGATGCTGTAATGGAGAAGTCTTCTGAAGAAGACGTTACTACCATCAAAATAGACAATTTTTCATCACTGGATGGTATTACTAATGATCGCAAGCAAGTTGAAGCACCAAACAATGCCAAAGACCGGTCGGGTTTATCTCAGTCTTCCAGCAAGAACCTAGAACACGAACATCTTATATGGGTTCAGATTTGGCGGTTTCATCAAGTCCCCCCAAATCTAAACCCGGATCGAAAAAGAAAGTGGCCTTCATATCTGTGA 1011 41.35 MDAEFETIEARLQSFISQFQSEVGVLDRIVHKYKNQHRRSSYFQYLLKVRRDCKLLQSTNLVELVNSSFLVINGNRPKQKVQLLESLKRRKCDGGKHNFLGRIQGAARLLSQMVEPMLKAAIEISTLLARSFFMGFSMTVLALLARLRVLTQQILLDVVSAFNMVSSLSRKQQSIKLNQEGIEVFREYYPTNEHTVFLECVWETDKFILLERKSEPENKNPDTIKEDFICRGSSTVEYQSVETILGEHKPMDAVMEKSSEEDVTTIKIDNFSSLDGITNDRKQVEAPNNAKDRSGLSQSSSKNLEHEHLIWVQIWRFHQVPPNLNPDRKRKWPSYL 336
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00899 336 PANTHER OS09G0504900 PROTEIN 4 311 - -
Chmo15g00899 336 Pfam Nucleolus and neural progenitor protein, N-terminal 4 163 IPR027951 -
Chmo15g00899 336 MobiDBLite consensus disorder prediction 278 301 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00899 K27075 nucleolus and neural progenitor protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
213711 Chmo14g00964 Chmo15g00899
226318 Chmo15g00899 Chmo13g01022
239058 Chmo13g01022 Chmo15g00899
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1310417 Chmo Chmo15g00899 Chmo-Chr15:51538476 Chmo21g02861 Chmo-Chr21:181551692
1460727 Chmo Chmo21g02862 Chmo-Chr21:181553525 Chmo15g00899 Chmo-Chr15:51538476
1494466 Chmo Chmo13g01022 Chmo-Chr13:53427983 Chmo15g00899 Chmo-Chr15:51538476
1500074 Chmo Chmo14g00964 Chmo-Chr14:47770570 Chmo15g00899 Chmo-Chr15:51538476