AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00905 ATGAAACCCAAACATTCATCATCATCGTCCTTCATTTCCAAAACCCTTATAATAATAACACTAATCATCACCTTTATATACACTGCAAACATTCCAAAAGTAGAAGGTTTTAAAGCACCAGTTGACCCACTAGACATACTCCCACTTTTGCCCAGACAAATTTCATGGCCTATTCTGAATAAGCTTCGAAGCGCCGCAGATTTGCTTCCGAGCTTCGTTGGCTCCGCTTCGATAGCGAATAATTCGGGTCTGAGTTGGAAAGGGTCTTGTTTTTATCAAAATAGTGCTTGGTTGGAACTTCATAATAAAACTGGGAGTCAGTTTGGTGGTGGTACTCTTCATATTAAGGTAAGCAATGCACACAGTTGGACATGTATGGATATTTATGTCTTTGCTACTCCATATCGTGTGACATGGGACTATTATTTTATATCCCGTGAGCATACGCTTGAGTTCGATGAGTGGTCTGAGAAAGCTGAGTATGAATACGTAAAACGTAAGGGAGTTGCCATTTTCCTAATGCAAGCAGGGATGATAGGGACCCTAGAAGCATTGTGGGAGGTATTCCCCCTGTTTTCAAACACCGGATGGGGCGAGAATTCTAATCTTGCTTTTCTTACAAAACATATGGGAGCTAACTTTGAAGCACGTCCTGAGCCGTGGGTTACAAATATTACTGTTGATGATATACATTCGGGAGACTTTCTTGCAATATCAAAAATTCGTGGTAGATGGGGTGGGTTCGAGACTCTCGAGAAATGGGTATCTGGGGCATATGCTGGTCATTCCGCTGTTTGCTTAAGGGATCCTCAAGGAAAACTATGGGTTGGGGAATCGGGGCATGAAGATGAAGAGGGTCAAGATGTTATTGCTCTGTTGCCTTGGGATGAGTGGTGGAACTTTGAGTTAACAGAAGATGATTCTAATCCTCATATTGCTCTACTTCCTTTGCATCCTGACCTTCGAGCTAAATTTAACGAGACCGCTGCATGGGAGTATGCCCAAAGCATGATTGGCTTACCATACGGTTATCACAATTTGATATTTAGCTGGATAGACACTATCAGTGATAATTTCCCTCCACCATTGGATGCTAATCTGGTTGCATCTGTTATGACCGTGTGGAATCAAATGCAGCCTGCATATGCTGCTAACATGTGGAATGAAGCCTTGAATAAGCGGCTTGGTACTAAGGGGCTCGAGCTTCCTGATATTTTAGTCGAAGTTGAAAGACGTGGTTCATCTTTTGCTGAACTATTGACCATACCTGAACAGGATGACTGGATATACGCCGACGGAAAGTCAACTTCTTGTGTTGCTTTCGTCCTAGAAATGTACAAGGAAGCAGGACTATTTGGAGATCTCTCTGACGAAATTCAAGTTACTGAATTCACTATAAAGGACGCTTACACGCTTAACTTCTATGAAAACAATTCGAGTCGTCTGCCAAAGTGGTGTAATGAAGGAGACACTGTTGAGCTTCCATTTTGTCAAATCAAAGGAAAGTATCGAATGGAACTACCTGGATACAATACCATTGAACCGTATCCTCATATGACCGAACATTGCCCGTCACTGCCCCCTGACTATTCAAGGCCTGATTACTGCTGA 1611 42.52 MKPKHSSSSSFISKTLIIITLIITFIYTANIPKVEGFKAPVDPLDILPLLPRQISWPILNKLRSAADLLPSFVGSASIANNSGLSWKGSCFYQNSAWLELHNKTGSQFGGGTLHIKVSNAHSWTCMDIYVFATPYRVTWDYYFISREHTLEFDEWSEKAEYEYVKRKGVAIFLMQAGMIGTLEALWEVFPLFSNTGWGENSNLAFLTKHMGANFEARPEPWVTNITVDDIHSGDFLAISKIRGRWGGFETLEKWVSGAYAGHSAVCLRDPQGKLWVGESGHEDEEGQDVIALLPWDEWWNFELTEDDSNPHIALLPLHPDLRAKFNETAAWEYAQSMIGLPYGYHNLIFSWIDTISDNFPPPLDANLVASVMTVWNQMQPAYAANMWNEALNKRLGTKGLELPDILVEVERRGSSFAELLTIPEQDDWIYADGKSTSCVAFVLEMYKEAGLFGDLSDEIQVTEFTIKDAYTLNFYENNSSRLPKWCNEGDTVELPFCQIKGKYRMELPGYNTIEPYPHMTEHCPSLPPDYSRPDYC 536
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00905 536 PANTHER OS01G0793500 PROTEIN 15 536 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00905 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1310423 Chmo Chmo15g00905 Chmo-Chr15:52488309 Chmo7g00579 Chmo-Chr7:28614883
1463397 Chmo Chmo26g00818 Chmo-Chr26:73644016 Chmo15g00905 Chmo-Chr15:52488309
1494471 Chmo Chmo13g01035 Chmo-Chr13:53862544 Chmo15g00905 Chmo-Chr15:52488309
1500080 Chmo Chmo14g00973 Chmo-Chr14:48433484 Chmo15g00905 Chmo-Chr15:52488309
1502827 Chmo Chmo15g00905 Chmo-Chr15:52488309 Chmo16g00988 Chmo-Chr16:41795150
1502874 Chmo Chmo15g00905 Chmo-Chr15:52488309 Chmo17g00910 Chmo-Chr17:38123906
1502936 Chmo Chmo15g00905 Chmo-Chr15:52488309 Chmo18g00974 Chmo-Chr18:41660406
1504328 Chmo Chmo15g00905 Chmo-Chr15:52488309 Chmo4g02080 Chmo-Chr4:141841774