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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00929 ATGGATGACGAATATGGTATGTACAGAAGAGGAAGCAGTGGATGGTCATCCATGATTGGAATTGAAGAACTTCAAGAAACTGATGTTTGGTCTGTTTATAATGGAAGAAATGATTTCGACTCAAAATCTTTGAAGTCAAAGTCAAAAGGAGGATCATCTTCTAGTCTGACTTCAAGAACCAACTCTTTATCAAGTGCAGCCAGAATGATTCCTAGGCATAGTACCACCAATCCTGACACAGAATCTCGGATTCCTCGAAGACAATCAGCACCTGTCAAAGTTCCTGATTGGTCCAAAATCTATGGAAAGTCAAACAGATCATCACAAAATTCTGCATTTCTTGATTATGGTAATGATTACGGTCATGATTATGATGATGATAATGATGGTGATGATGATGTGGGCATGATGCCTCCACATGAATGGATTGCACAGAAGTATGCCAGGAGTCAAATTTCATCGTTTTCGGTCTGTGAAGGCGCGGGAAGAACGCTTAAAGGCAGAGATCTCAGTAGGGTAAGAAATGCTGTCTTGACGAAAACTGGTTTTCTTGAATAA 558 39.96 MDDEYGMYRRGSSGWSSMIGIEELQETDVWSVYNGRNDFDSKSLKSKSKGGSSSSLTSRTNSLSSAARMIPRHSTTNPDTESRIPRRQSAPVKVPDWSKIYGKSNRSSQNSAFLDYGNDYGHDYDDDNDGDDDVGMMPPHEWIAQKYARSQISSFSVCEGAGRTLKGRDLSRVRNAVLTKTGFLE 185
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00929 185 Pfam Senescence regulator 22 185 IPR007608 -
Chmo15g00929 185 MobiDBLite consensus disorder prediction 38 108 - -
Chmo15g00929 185 MobiDBLite consensus disorder prediction 46 84 - -
Chmo15g00929 185 PANTHER EMB|CAB72159.1 19 184 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00929 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
213726 Chmo14g00999 Chmo15g00929
226333 Chmo15g00929 Chmo13g01056
239073 Chmo13g01056 Chmo15g00929
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:325133290 Chmo15g00929 Chmo-Chr15:53257634 dispersed
Chmo Chmo-Chr14:307206956 Chmo15g00929 Chmo-Chr15:53257634 dispersed
Chmo Chmo-Chr15:53257634 Chmo15g04866 Chmo-Chr15:298347293 dispersed
Chmo Chmo-Chr13:54325931 Chmo15g00929 Chmo-Chr15:53257634 wgd
Chmo Chmo-Chr14:49294669 Chmo15g00929 Chmo-Chr15:53257634 wgd