Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo15g00953 | ATGGTGAATTTTCTGGACCGTGGGAACATTGAATTATTTGATCCTTTACGAGGGATATCAAATGAACCTGTCGAAGATATCGCTGTTGCAGAAAAACCCGCTGCTAGTCAAGCAACCTCTCATCACTCCGCAAAAGAATGGGCATCTTTTAATAAGCTATTAATGCAGAGATTTCCTGTGCCAAAACAGATATCACTTTCTGCATTATCGAGCAAAACTATAAAATGCAAGAAGGTAATCGGAGAACTGCAACCAAATAAGCAGTCGGATGAGCTGAGCGAATCTCAAAAGTTGACTGAAGGAGGACTTAAGGCTGTGAGCCAGCAAGAGTTTATCAGACGATTGCATGAACTTAAAGACGAGATTAGGCGGTTCTGGAATTCTGATGATCGCGTAACGTCATTAAATCTGTCAATTAAGGTTGCTAAGCTTCTGATGGACACTTCCGTGGCACACTTTTATCCAACGTTATTTGTTCTAGCTACTGATATACTGGACATGCTAGGTGACATGGTATGGGACCGGATTAAGGAAAAAGCCGAGTTTGCAGATAATGGAACTAGGACATGCACTTTATCAGATGACTTTGAAGCAAATAATATATGCCTTGAAGCCAGAGAGACCTGCAGTAACTGGTTCAGAAAAATTGCGTCCATTCAAGAGCTTCTTCCACGCATATATCTCGAGCTTGCAATATTTTCATGCTGGCGATTCCTGGATGATCATGTTATGGATAAACTCATGCGATTGGTTATGATGATAAGAGGGATTGCTGATCCGTTGGCATCAGCCTGCTGTCGCTTCTTTTTAATTCACTGTGCCCAGAAACTTCCCAACTGTGATACAGGGTACCTGATAAGTTGCATCAATGACCAAAAAATTGTACTTACGCGGATTGTATCTATGAAAGAAACCAAGTATGGGAACTTTTTAGGAGATCAAAAGTTGCTAATTAGCTTGATGGAACCAACAATCGAGTATACTATGAGATGCATTTTCAAGGATCCAAACCAGGTTGGTGATATGATAGTGAAACTTGATCTAGGGAAGAATCCATCGGAATTAACTGGAAAAGTTCCTTGGATATCAATTTTTCTCTATTATTTACTTCGGGAAATACCAACTGAAATAGTTTGTTCTAGTGCTTTAGAATTTCTTCACCTTGTTGACTGCAGCAGTGATTGTTCGTTTGATCAGGTTGCTACCAGAAGGAAGAGCCTTAATGAGTACTTGAAGATCTTGGATGCTTATATGGATATTATTCTTCAATATAAGAAGGATGAATACCTAAGCTCCGTTCTAGGTGAAATATTTGAGAGAGTGTGCAATGAAATGGTTACCGAAGATGAACTGGCTAGCCTGCAATCAATTATTGTGAAGCTGGTCACACATTTTGATGACATGAAGTACGTTTTTGACCTGAACTATTTTGTTGACATATTAGATGTCATGCATGGGAGCTCTAGAAGCATAGTGAGTATGAACATCCTTACTATTGCCACAAGCAGACATGATCGCATCGATGATCCTACAACGGTAAAACTGCTTTTTGATGTTGCTCAATCTCTTCATGATAGTGTTGATTTCTCAAGCACGAAACAAGATGATAATCAACAGGCAGAGCGTCTGATTGCTCGTTTTATTGATAAGGTTGATCATGGTACTGATTTGGATCGCCATTTGACATTCTTGGTTGAGTGTCGTGGAGCATTCAGTAGCATGAATGATTTGAATGAGCTCCTTGTTCAATCGAGCAATCTTCTAGCAACCAGAGCTTCGAGAGAGAAAAAAGATAATATCAATTTCATCAAATCTTGTATCACTTTCAATGAAGTTACGATACCATGTATTCCATCTTATTCCAGGCAGCTAATCTTATATCTTGAAACCGCAGAGGTTTCCCTGTTTGGAGGCTTAATTTCTCATTTGGATGGACTTCTAGATTCCGCAGTCAGCTGCTTACAAGATTTGTTGGTAGATGGGTCGCGGAAATCCACTGAAGATGCTGATGGTATTGTTTCCTTAATGAGAAAGCTGTGCGGCTTCATCTTATTGGTTCCAGGTAATTCAGAACAAGGAGTCACCTACATCCCCAAGAGCATATTATCCTTGCTTGATTCACAATCATGGATTACACCAAAACTAAGGATAAGGGTCTTATGTTCACTTCTTTCATTAGCTGCAACATATTCTCAAAATGAACTCCCATACCATGCAATTCATGAAGAGGTTATTGGCAATGACCGTTTATTTTTTGGTCATGCAATGTATTCTCAAGAACTTGGGTCGTTATCTGGTGTTATACTTAATAACATAGTTGATACTATTGCACAAGAATCTTCACAGGTGATCGAGTAA | 2358 | 39.4 | MVNFLDRGNIELFDPLRGISNEPVEDIAVAEKPAASQATSHHSAKEWASFNKLLMQRFPVPKQISLSALSSKTIKCKKVIGELQPNKQSDELSESQKLTEGGLKAVSQQEFIRRLHELKDEIRRFWNSDDRVTSLNLSIKVAKLLMDTSVAHFYPTLFVLATDILDMLGDMVWDRIKEKAEFADNGTRTCTLSDDFEANNICLEARETCSNWFRKIASIQELLPRIYLELAIFSCWRFLDDHVMDKLMRLVMMIRGIADPLASACCRFFLIHCAQKLPNCDTGYLISCINDQKIVLTRIVSMKETKYGNFLGDQKLLISLMEPTIEYTMRCIFKDPNQVGDMIVKLDLGKNPSELTGKVPWISIFLYYLLREIPTEIVCSSALEFLHLVDCSSDCSFDQVATRRKSLNEYLKILDAYMDIILQYKKDEYLSSVLGEIFERVCNEMVTEDELASLQSIIVKLVTHFDDMKYVFDLNYFVDILDVMHGSSRSIVSMNILTIATSRHDRIDDPTTVKLLFDVAQSLHDSVDFSSTKQDDNQQAERLIARFIDKVDHGTDLDRHLTFLVECRGAFSSMNDLNELLVQSSNLLATRASREKKDNINFIKSCITFNEVTIPCIPSYSRQLILYLETAEVSLFGGLISHLDGLLDSAVSCLQDLLVDGSRKSTEDADGIVSLMRKLCGFILLVPGNSEQGVTYIPKSILSLLDSQSWITPKLRIRVLCSLLSLAATYSQNELPYHAIHEEVIGNDRLFFGHAMYSQELGSLSGVILNNIVDTIAQESSQVIE | 785 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo15g00953 | 785 | PANTHER | ESOPHAGEAL CANCER ASSOCIATED PROTEIN | 5 | 401 | IPR029705 | GO:0005768(PANTHER)|GO:0032456(InterPro)|GO:0032456(PANTHER) | |
| Chmo15g00953 | 785 | Pfam | Vacuolar protein sorting-associated protein 35 | 316 | 615 | IPR005378 | GO:0015031(InterPro)|GO:0030906(InterPro)|GO:0042147(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo15g00953 | K25731 | VPS35 endosomal protein-sorting factor-like |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 213732 | Chmo14g01019 | Chmo15g00953 | |
| 226339 | Chmo15g00953 | Chmo13g01089 | |
| 239079 | Chmo13g01089 | Chmo15g00953 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr13:55641947 | Chmo15g00953 | Chmo-Chr15:54985259 | dispersed | |
| Chmo | Chmo-Chr14:50829181 | Chmo15g00953 | Chmo-Chr15:54985259 | dispersed | |
| Chmo | Chmo-Chr15:54908182 | Chmo15g00953 | Chmo-Chr15:54985259 | proximal |