AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00953 ATGGTGAATTTTCTGGACCGTGGGAACATTGAATTATTTGATCCTTTACGAGGGATATCAAATGAACCTGTCGAAGATATCGCTGTTGCAGAAAAACCCGCTGCTAGTCAAGCAACCTCTCATCACTCCGCAAAAGAATGGGCATCTTTTAATAAGCTATTAATGCAGAGATTTCCTGTGCCAAAACAGATATCACTTTCTGCATTATCGAGCAAAACTATAAAATGCAAGAAGGTAATCGGAGAACTGCAACCAAATAAGCAGTCGGATGAGCTGAGCGAATCTCAAAAGTTGACTGAAGGAGGACTTAAGGCTGTGAGCCAGCAAGAGTTTATCAGACGATTGCATGAACTTAAAGACGAGATTAGGCGGTTCTGGAATTCTGATGATCGCGTAACGTCATTAAATCTGTCAATTAAGGTTGCTAAGCTTCTGATGGACACTTCCGTGGCACACTTTTATCCAACGTTATTTGTTCTAGCTACTGATATACTGGACATGCTAGGTGACATGGTATGGGACCGGATTAAGGAAAAAGCCGAGTTTGCAGATAATGGAACTAGGACATGCACTTTATCAGATGACTTTGAAGCAAATAATATATGCCTTGAAGCCAGAGAGACCTGCAGTAACTGGTTCAGAAAAATTGCGTCCATTCAAGAGCTTCTTCCACGCATATATCTCGAGCTTGCAATATTTTCATGCTGGCGATTCCTGGATGATCATGTTATGGATAAACTCATGCGATTGGTTATGATGATAAGAGGGATTGCTGATCCGTTGGCATCAGCCTGCTGTCGCTTCTTTTTAATTCACTGTGCCCAGAAACTTCCCAACTGTGATACAGGGTACCTGATAAGTTGCATCAATGACCAAAAAATTGTACTTACGCGGATTGTATCTATGAAAGAAACCAAGTATGGGAACTTTTTAGGAGATCAAAAGTTGCTAATTAGCTTGATGGAACCAACAATCGAGTATACTATGAGATGCATTTTCAAGGATCCAAACCAGGTTGGTGATATGATAGTGAAACTTGATCTAGGGAAGAATCCATCGGAATTAACTGGAAAAGTTCCTTGGATATCAATTTTTCTCTATTATTTACTTCGGGAAATACCAACTGAAATAGTTTGTTCTAGTGCTTTAGAATTTCTTCACCTTGTTGACTGCAGCAGTGATTGTTCGTTTGATCAGGTTGCTACCAGAAGGAAGAGCCTTAATGAGTACTTGAAGATCTTGGATGCTTATATGGATATTATTCTTCAATATAAGAAGGATGAATACCTAAGCTCCGTTCTAGGTGAAATATTTGAGAGAGTGTGCAATGAAATGGTTACCGAAGATGAACTGGCTAGCCTGCAATCAATTATTGTGAAGCTGGTCACACATTTTGATGACATGAAGTACGTTTTTGACCTGAACTATTTTGTTGACATATTAGATGTCATGCATGGGAGCTCTAGAAGCATAGTGAGTATGAACATCCTTACTATTGCCACAAGCAGACATGATCGCATCGATGATCCTACAACGGTAAAACTGCTTTTTGATGTTGCTCAATCTCTTCATGATAGTGTTGATTTCTCAAGCACGAAACAAGATGATAATCAACAGGCAGAGCGTCTGATTGCTCGTTTTATTGATAAGGTTGATCATGGTACTGATTTGGATCGCCATTTGACATTCTTGGTTGAGTGTCGTGGAGCATTCAGTAGCATGAATGATTTGAATGAGCTCCTTGTTCAATCGAGCAATCTTCTAGCAACCAGAGCTTCGAGAGAGAAAAAAGATAATATCAATTTCATCAAATCTTGTATCACTTTCAATGAAGTTACGATACCATGTATTCCATCTTATTCCAGGCAGCTAATCTTATATCTTGAAACCGCAGAGGTTTCCCTGTTTGGAGGCTTAATTTCTCATTTGGATGGACTTCTAGATTCCGCAGTCAGCTGCTTACAAGATTTGTTGGTAGATGGGTCGCGGAAATCCACTGAAGATGCTGATGGTATTGTTTCCTTAATGAGAAAGCTGTGCGGCTTCATCTTATTGGTTCCAGGTAATTCAGAACAAGGAGTCACCTACATCCCCAAGAGCATATTATCCTTGCTTGATTCACAATCATGGATTACACCAAAACTAAGGATAAGGGTCTTATGTTCACTTCTTTCATTAGCTGCAACATATTCTCAAAATGAACTCCCATACCATGCAATTCATGAAGAGGTTATTGGCAATGACCGTTTATTTTTTGGTCATGCAATGTATTCTCAAGAACTTGGGTCGTTATCTGGTGTTATACTTAATAACATAGTTGATACTATTGCACAAGAATCTTCACAGGTGATCGAGTAA 2358 39.4 MVNFLDRGNIELFDPLRGISNEPVEDIAVAEKPAASQATSHHSAKEWASFNKLLMQRFPVPKQISLSALSSKTIKCKKVIGELQPNKQSDELSESQKLTEGGLKAVSQQEFIRRLHELKDEIRRFWNSDDRVTSLNLSIKVAKLLMDTSVAHFYPTLFVLATDILDMLGDMVWDRIKEKAEFADNGTRTCTLSDDFEANNICLEARETCSNWFRKIASIQELLPRIYLELAIFSCWRFLDDHVMDKLMRLVMMIRGIADPLASACCRFFLIHCAQKLPNCDTGYLISCINDQKIVLTRIVSMKETKYGNFLGDQKLLISLMEPTIEYTMRCIFKDPNQVGDMIVKLDLGKNPSELTGKVPWISIFLYYLLREIPTEIVCSSALEFLHLVDCSSDCSFDQVATRRKSLNEYLKILDAYMDIILQYKKDEYLSSVLGEIFERVCNEMVTEDELASLQSIIVKLVTHFDDMKYVFDLNYFVDILDVMHGSSRSIVSMNILTIATSRHDRIDDPTTVKLLFDVAQSLHDSVDFSSTKQDDNQQAERLIARFIDKVDHGTDLDRHLTFLVECRGAFSSMNDLNELLVQSSNLLATRASREKKDNINFIKSCITFNEVTIPCIPSYSRQLILYLETAEVSLFGGLISHLDGLLDSAVSCLQDLLVDGSRKSTEDADGIVSLMRKLCGFILLVPGNSEQGVTYIPKSILSLLDSQSWITPKLRIRVLCSLLSLAATYSQNELPYHAIHEEVIGNDRLFFGHAMYSQELGSLSGVILNNIVDTIAQESSQVIE 785
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00953 785 PANTHER ESOPHAGEAL CANCER ASSOCIATED PROTEIN 5 401 IPR029705 GO:0005768(PANTHER)|GO:0032456(InterPro)|GO:0032456(PANTHER)
Chmo15g00953 785 Pfam Vacuolar protein sorting-associated protein 35 316 615 IPR005378 GO:0015031(InterPro)|GO:0030906(InterPro)|GO:0042147(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00953 K25731 VPS35 endosomal protein-sorting factor-like
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Event-related genes

Select Gene_1 Gene_2 Event_name
213732 Chmo14g01019 Chmo15g00953
226339 Chmo15g00953 Chmo13g01089
239079 Chmo13g01089 Chmo15g00953
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:55641947 Chmo15g00953 Chmo-Chr15:54985259 dispersed
Chmo Chmo-Chr14:50829181 Chmo15g00953 Chmo-Chr15:54985259 dispersed
Chmo Chmo-Chr15:54908182 Chmo15g00953 Chmo-Chr15:54985259 proximal