AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00984 ATGGCGGAACATTTTGCTGGTGATGCTACTGATCAAATAAGTACTCCATCTCGTTGTGATGTTAATGCACGCGATTCTTCTACATGGAGACTCGATATCAACAACTTTCGTTTACCAGAATCTGCCTTTCTGCCTACCCCAAAGAAACGAGGAAAAGTGAAAGCATACTACAAGAAACAAGAATTGCTCTTTGAAGGGTACAATGAGATGGAAACAATAAGCACATTAGGCTTTGCACCTGGAGGCCTAACAGAGGATGAAATGAAGAATCTTGCTAAAAGTGAAAGAATGGCTATCTATGTGTCGAACATAGCTAACTTGGTTCTTTTCATCGCTAAAGTCTATGCATCATACAAGAGTAAATCATTAGCAGTTATTGCATCTACTTTGGATTCATTTTTAGACTTGTTGTCCGGATTTATTTTATGGTTCACTTCAAACGCCATGAGGAATCCTAATCAGTATCACTATCCAATTGGGAAGAACCGTATGCAACCTGTTGGGATTGTTGTTTTTGCGTCAGTAATGGCAACTCTTGGTTTCCAAATATTGCTCGAGTCTGCTAGAGAACTCATTGCCGGGACACACCCTAACAAGAGTCATTATGATGAAATGTGGGTGATTGGTATCATGGTGTCCGTGACTGCAGTGAAATTTGTCCTCATGGTTTATTGTCGAAGATTTGAAAATGAAATAGTAAGAGCCTACGCGCAAGATCATTTCTTCGACGTCATCACAAACTCAGTTGGATTAGCAGCAACAGTCTTAGCCATACGTTACAAATGGTGGATTGATCCCGTTGGAGCTATACTTATAGCACTCTATACGATAAATACATGGTCAAAGACCGTTCTAGAGAATGTATGGTCGTTAATTGGGAGGACGGCTCCACCAGAATTCTTAGCGAAATTGACATATTTGGTTTGGAACCATCACGAAGAAATAAAACACATTGATACAGTTAGAGCATACACATTCGGGAGTCATTACTTTGTTGAGGTAGACATAGTGTTGCCCAAGGAAATGATGCTTGGTGAGGCACACAATATCGGGGAAGTGTTGCAAGAGAAACTAGAGCAGTTGCCAGAAGTTGAACGAGCTTTTGTTCATATCGATTTTGAGTTCACTCATGCACCTGAACATAAGGCAAAAGTTTGA 1158 40.33 MAEHFAGDATDQISTPSRCDVNARDSSTWRLDINNFRLPESAFLPTPKKRGKVKAYYKKQELLFEGYNEMETISTLGFAPGGLTEDEMKNLAKSERMAIYVSNIANLVLFIAKVYASYKSKSLAVIASTLDSFLDLLSGFILWFTSNAMRNPNQYHYPIGKNRMQPVGIVVFASVMATLGFQILLESARELIAGTHPNKSHYDEMWVIGIMVSVTAVKFVLMVYCRRFENEIVRAYAQDHFFDVITNSVGLAATVLAIRYKWWIDPVGAILIALYTINTWSKTVLENVWSLIGRTAPPEFLAKLTYLVWNHHEEIKHIDTVRAYTFGSHYFVEVDIVLPKEMMLGEAHNIGEVLQEKLEQLPEVERAFVHIDFEFTHAPEHKAKV 385
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00984 385 Pfam Cation efflux family 100 291 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Chmo15g00984 385 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 48 382 IPR050291 GO:0008324(PANTHER)|GO:0016020(PANTHER)
Chmo15g00984 385 Gene3D Cation efflux protein transmembrane domain 96 291 IPR027469 -
Chmo15g00984 385 Gene3D Cation efflux protein, cytoplasmic domain 295 373 IPR036837 -
Chmo15g00984 385 FunFam Metal tolerance protein 11 98 291 - -
Chmo15g00984 385 Pfam Dimerisation domain of Zinc Transporter 297 372 IPR027470 -
Chmo15g00984 385 SUPERFAMILY Cation efflux protein transmembrane domain-like 94 293 IPR027469 -
Chmo15g00984 385 NCBIfam cation diffusion facilitator family transporter 98 372 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Chmo15g00984 385 FunFam Metal tolerance protein 11 294 374 - -
Chmo15g00984 385 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 296 372 IPR036837 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00984 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
49275 Chmo15g00984 Chmo22g05644
49276 Chmo15g00984 Chmo24g05757
213742 Chmo14g01035 Chmo15g00984
226351 Chmo15g00984 Chmo13g01116
239091 Chmo13g01116 Chmo15g00984
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:56883442 Chmo24g05781 Chmo-Chr24:328127141 dispersed
Chmo Chmo-Chr13:57306403 Chmo15g00984 Chmo-Chr15:56883442 wgd
Chmo Chmo-Chr14:51881020 Chmo15g00984 Chmo-Chr15:56883442 wgd