Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo15g00984 | ATGGCGGAACATTTTGCTGGTGATGCTACTGATCAAATAAGTACTCCATCTCGTTGTGATGTTAATGCACGCGATTCTTCTACATGGAGACTCGATATCAACAACTTTCGTTTACCAGAATCTGCCTTTCTGCCTACCCCAAAGAAACGAGGAAAAGTGAAAGCATACTACAAGAAACAAGAATTGCTCTTTGAAGGGTACAATGAGATGGAAACAATAAGCACATTAGGCTTTGCACCTGGAGGCCTAACAGAGGATGAAATGAAGAATCTTGCTAAAAGTGAAAGAATGGCTATCTATGTGTCGAACATAGCTAACTTGGTTCTTTTCATCGCTAAAGTCTATGCATCATACAAGAGTAAATCATTAGCAGTTATTGCATCTACTTTGGATTCATTTTTAGACTTGTTGTCCGGATTTATTTTATGGTTCACTTCAAACGCCATGAGGAATCCTAATCAGTATCACTATCCAATTGGGAAGAACCGTATGCAACCTGTTGGGATTGTTGTTTTTGCGTCAGTAATGGCAACTCTTGGTTTCCAAATATTGCTCGAGTCTGCTAGAGAACTCATTGCCGGGACACACCCTAACAAGAGTCATTATGATGAAATGTGGGTGATTGGTATCATGGTGTCCGTGACTGCAGTGAAATTTGTCCTCATGGTTTATTGTCGAAGATTTGAAAATGAAATAGTAAGAGCCTACGCGCAAGATCATTTCTTCGACGTCATCACAAACTCAGTTGGATTAGCAGCAACAGTCTTAGCCATACGTTACAAATGGTGGATTGATCCCGTTGGAGCTATACTTATAGCACTCTATACGATAAATACATGGTCAAAGACCGTTCTAGAGAATGTATGGTCGTTAATTGGGAGGACGGCTCCACCAGAATTCTTAGCGAAATTGACATATTTGGTTTGGAACCATCACGAAGAAATAAAACACATTGATACAGTTAGAGCATACACATTCGGGAGTCATTACTTTGTTGAGGTAGACATAGTGTTGCCCAAGGAAATGATGCTTGGTGAGGCACACAATATCGGGGAAGTGTTGCAAGAGAAACTAGAGCAGTTGCCAGAAGTTGAACGAGCTTTTGTTCATATCGATTTTGAGTTCACTCATGCACCTGAACATAAGGCAAAAGTTTGA | 1158 | 40.33 | MAEHFAGDATDQISTPSRCDVNARDSSTWRLDINNFRLPESAFLPTPKKRGKVKAYYKKQELLFEGYNEMETISTLGFAPGGLTEDEMKNLAKSERMAIYVSNIANLVLFIAKVYASYKSKSLAVIASTLDSFLDLLSGFILWFTSNAMRNPNQYHYPIGKNRMQPVGIVVFASVMATLGFQILLESARELIAGTHPNKSHYDEMWVIGIMVSVTAVKFVLMVYCRRFENEIVRAYAQDHFFDVITNSVGLAATVLAIRYKWWIDPVGAILIALYTINTWSKTVLENVWSLIGRTAPPEFLAKLTYLVWNHHEEIKHIDTVRAYTFGSHYFVEVDIVLPKEMMLGEAHNIGEVLQEKLEQLPEVERAFVHIDFEFTHAPEHKAKV | 385 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo15g00984 | 385 | Pfam | Cation efflux family | 100 | 291 | IPR002524 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Chmo15g00984 | 385 | PANTHER | MITOCHONDRIAL METAL TRANSPORTER 1-RELATED | 48 | 382 | IPR050291 | GO:0008324(PANTHER)|GO:0016020(PANTHER) | |
| Chmo15g00984 | 385 | Gene3D | Cation efflux protein transmembrane domain | 96 | 291 | IPR027469 | - | |
| Chmo15g00984 | 385 | Gene3D | Cation efflux protein, cytoplasmic domain | 295 | 373 | IPR036837 | - | |
| Chmo15g00984 | 385 | FunFam | Metal tolerance protein 11 | 98 | 291 | - | - | |
| Chmo15g00984 | 385 | Pfam | Dimerisation domain of Zinc Transporter | 297 | 372 | IPR027470 | - | |
| Chmo15g00984 | 385 | SUPERFAMILY | Cation efflux protein transmembrane domain-like | 94 | 293 | IPR027469 | - | |
| Chmo15g00984 | 385 | NCBIfam | cation diffusion facilitator family transporter | 98 | 372 | IPR002524 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Chmo15g00984 | 385 | FunFam | Metal tolerance protein 11 | 294 | 374 | - | - | |
| Chmo15g00984 | 385 | SUPERFAMILY | Cation efflux protein cytoplasmic domain-like | 296 | 372 | IPR036837 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo15g00984 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 49275 | Chmo15g00984 | Chmo22g05644 | |
| 49276 | Chmo15g00984 | Chmo24g05757 | |
| 213742 | Chmo14g01035 | Chmo15g00984 | |
| 226351 | Chmo15g00984 | Chmo13g01116 | |
| 239091 | Chmo13g01116 | Chmo15g00984 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr15:56883442 | Chmo24g05781 | Chmo-Chr24:328127141 | dispersed | |
| Chmo | Chmo-Chr13:57306403 | Chmo15g00984 | Chmo-Chr15:56883442 | wgd | |
| Chmo | Chmo-Chr14:51881020 | Chmo15g00984 | Chmo-Chr15:56883442 | wgd |