AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g01074 ATGATATCCATTGATGAACATCCACCATCAGATCCTTCATCATCTCATGATCTCAAAAGTTCTGATAATACAGATCTGAAGTCTTCAGATGCTTCTGCTGATCTTGATGATACTTACAACCCTCTTCCCAATATTTCTATAAGGGATTATGTTTTTGGCTTAAGGAACAAAGATATTGCTGGTAATTGGCCTTTTTCTCCCACAAGTTTGCAACTTTGCTTGAAACATGGAGTCAAGAATTTGCTGCCGTCTTTCGAGTCTCTTGATTCACTAAGGAATAGCACACCTTTGACCAGATGCAGTCCTGGAAATCGGTCGACTGAGGACGAAATCATAAACAAACTTGATGTAAAGCCGATGAATGATCAAATTAGAGTTGCAAGCTTAAATTCAAGTGGTTCAAAGAAAGATCAAGAATCTCAATTTCGTTATCAAGAAACTTTGGCTCGCACAAGGTCAAAGGAAAAACCTTCTCAAAAGATTCAAAACACTTCTTGCGATAAAAAGAGTGGACACATAATGAAACTGAAGCTGAAGTCTGCTGTTGAACGGGTTGAAAAATCTCAATTTCATCATCAAGAATATTTGGGTCATACAAAGTCAAAGGAAAAACCTTTGCAAAAGAATGAAAATGTTTCTTCTCGCACAAAAAAGAGTAGATTCGTAATGAAACTGAATTCAGGTGTTGAAGGAGTCGAAGAAGTTGTTCCAAACTGTCCTATCGTTCCTGAAACAATGGCGTCGAAAGTTTGTCCCGTTTGCAAGATTTTCTCATCATCGTCAAACACGACATTGAACGCTCATATTGACCAATGTCTGACCGGTGAGGGGACTTTGAAGTGGACCGAAAATCCTAAGATTTTAGTGAAACACAAAGTCAAGCCAAGGAAGATGAGGTCAATGGTTGATATATACAAAACAGCTCCACATTGTACAGTTGAGGAACTCGATAAAAGGAATGGAACGAGTTGGGCTACTAATTCATGTTTTCCTGACCAAGAGTTCCAGTGTCAGGGAGAAGAAAAAGAAGAAGATGACAAAGAAGAAGAGGACTTAGAGAAAGAAGATTATATCGATACCAATGGCAAAAAAGTTCGAATCTTGTCGGTCCCCAAAATAGTTTTGTCAGATAATAATAGTGCTCGGAAGTTAGTGAAAAGAGTGAAAGGGAGCAAAATGATCATGGCTAAAAAGAAAAGTAATATTTTTAAGAAGAAACATCAGCATAAGCAGTTGAAAATTAGTCCTAATGCCAGAAAGTTATGCTCATCAAAGCCTCAGGCAGTAAGTAGTCCAATAGCAGAAAGTTGCAGCGAAGATGAACGAGACAAAGAGATTATAAAGCCATCATGGGCATGGTCTAAACGAGCTAGTCTTTTAAAAAAGTCACGTGGCACGAATCAAAAGGTAGAAAATTTTAGTGGCAAGAATAGAAAAACAGATTTACAGTGCCGTGAAACGAAAGATTTGGTTGTTGAAATTGAGAAGTCTTCTTCAGGATGTGATTTCAAAATTCGTCAAAGCTCATCTCATAATAACCTGAGTTCCTCACACAGTAGGAAGAAAATGAGAATATCGTCACCTTTAATTAAACAGCCTCTCAATGAGTTTAGAAAGGAAGGAACCCGAATTCATCTTGATGAGGATGAGGATGATGACGACGACCACAACGACGATTTTGATAATGATGATTATGATACATATGATGATGCAGGTCCATCGCAACATTCTGATGGTGGTGATATTAGACCAAAGGGTAGCAAGTTTGCATCTTTATGCAAGAACCTATCATTCCCAGCTGCCAAATTCAGTTTTAAAAGGAAATTTTCAGCTGCTGAGAATTTAAATGAAGATCTTGATGATCGGCTTTCTCAAGATTCTTCCAAAGATCAATCGAGAATGGAAGAGCACGCGACTACAAGAACATATGCTTCAAAAAGCTCCAATGAAGAATCTTCTGTGGGGATTCGGACTGTTAACAAGGATGAGGTATGTGATGTGGAATCCATAAGAAACGAGACGTTGTTTTCCAATGCTGACCAAGTTCGCCTGTCTAGTTTTATGGGTTTGAGCACGTCATTTGATCTAGAATTTTCCAAGTGCATTGATCTATATCAAGATCAGATATGTTCAACTAACCGTGCTCCAAATGATGTTGAACAACACGAAAATTACATTCAGGAGGTTGATCCTATACCAATTCCTGGACCACCAGGATCATTCTTGCCCGCAAGCCCATGTGAAGAAATTGGAGAAATGGTTTCTGAAGAACAACTTCAAGCAACTAGTGTTCGGTCCAGTGAATACCAGAATCTTAAGGATACAATGGATCAAGATTCAACGTCTAACTCTCCAGTTTCAACTATCTCTAACTCAAGATCTACTTCTGTACAAGATGATACATATAAAAACCTGTTTTCTAATGGGGATACAGGCTTTACCGATAAAGGTCCGTCTCAAAATAGTTTAAAGAATGATCAGCCTTGCTGTTGCTCTCGTAAGGAGGCTGCTTTAAGCTATCAAGAATCGTTTAACTTAAGAAAACAACCGATTGAATCAAGTATTACTACTTCAAGGGGTTTGAACTTCGAATCCGAAATGTTTCCACTATGCAACTACCCGAATTCACGAGCACCTGCTTTAGTTGACAGTCCTTCAAAACCTGTTCTCAGGTTAATGGGTAAAAACTTAACCGTGGTTGAGATAGATGAAGACCAAGATGCATCGCTATCGTCACAACAGTTTAGAACTCCACCGTCAAGTCAACAAAATCCTCAACGTCCCGTGCCCTTTAGCCAGTACCAAAATGGCTTTGATTCTCAACATTTCAGTGCTCATCCACCAATTAATATGAGAAGTCATGTTGACTTGGGCCCCATAAATGGTGGTTTTATGACATGTATGAATCTCTATGATCGCGGCGGTTCTTATATGAAGCCCATGATGTCCCAAGCAAGGTCCCACCATGGTCATGATGCTATAGATTTTCAAGCGGTAAGTGGAAGAAATGTTTACAACAATGTTCCCTCTAGATCTCAGCCTATAAAGGAGATCATTGTTTTAGATGATTCTCCGGAAAATGAAGCTGGTTATTCTATGGGAAATGAGTTTTTGAAAAGAAATCAGGAGCAGATGAATCCGTTGTACTCGAAGTACCCGTCACAAAGATCTACTCATCTGTATGGTAGTGGTGGTTCAACGGCGTTTCATGGTGTTGGTTCCCAAACTTTTGAAAATGGAGATCCTGGCAGGTGGAATATAGGATACTCATCAGCATCGCCTTCAAGGTCTCAAATGCGATCTTTGACAACATACCATCCTCCTAGCTATCCTTAA 3336 39.21 MISIDEHPPSDPSSSHDLKSSDNTDLKSSDASADLDDTYNPLPNISIRDYVFGLRNKDIAGNWPFSPTSLQLCLKHGVKNLLPSFESLDSLRNSTPLTRCSPGNRSTEDEIINKLDVKPMNDQIRVASLNSSGSKKDQESQFRYQETLARTRSKEKPSQKIQNTSCDKKSGHIMKLKLKSAVERVEKSQFHHQEYLGHTKSKEKPLQKNENVSSRTKKSRFVMKLNSGVEGVEEVVPNCPIVPETMASKVCPVCKIFSSSSNTTLNAHIDQCLTGEGTLKWTENPKILVKHKVKPRKMRSMVDIYKTAPHCTVEELDKRNGTSWATNSCFPDQEFQCQGEEKEEDDKEEEDLEKEDYIDTNGKKVRILSVPKIVLSDNNSARKLVKRVKGSKMIMAKKKSNIFKKKHQHKQLKISPNARKLCSSKPQAVSSPIAESCSEDERDKEIIKPSWAWSKRASLLKKSRGTNQKVENFSGKNRKTDLQCRETKDLVVEIEKSSSGCDFKIRQSSSHNNLSSSHSRKKMRISSPLIKQPLNEFRKEGTRIHLDEDEDDDDDHNDDFDNDDYDTYDDAGPSQHSDGGDIRPKGSKFASLCKNLSFPAAKFSFKRKFSAAENLNEDLDDRLSQDSSKDQSRMEEHATTRTYASKSSNEESSVGIRTVNKDEVCDVESIRNETLFSNADQVRLSSFMGLSTSFDLEFSKCIDLYQDQICSTNRAPNDVEQHENYIQEVDPIPIPGPPGSFLPASPCEEIGEMVSEEQLQATSVRSSEYQNLKDTMDQDSTSNSPVSTISNSRSTSVQDDTYKNLFSNGDTGFTDKGPSQNSLKNDQPCCCSRKEAALSYQESFNLRKQPIESSITTSRGLNFESEMFPLCNYPNSRAPALVDSPSKPVLRLMGKNLTVVEIDEDQDASLSSQQFRTPPSSQQNPQRPVPFSQYQNGFDSQHFSAHPPINMRSHVDLGPINGGFMTCMNLYDRGGSYMKPMMSQARSHHGHDAIDFQAVSGRNVYNNVPSRSQPIKEIIVLDDSPENEAGYSMGNEFLKRNQEQMNPLYSKYPSQRSTHLYGSGGSTAFHGVGSQTFENGDPGRWNIGYSSASPSRSQMRSLTTYHPPSYP 1111
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 620 640 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 1 38 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 620 655 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 1086 1111 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 1074 1111 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 547 568 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 503 583 - -
Chmo15g01074 1111 Gene3D Classic Zinc Finger 250 275 - -
Chmo15g01074 1111 PANTHER HAPLESS PROTEIN 1 1110 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 10 32 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 757 803 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 906 932 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 194 217 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 503 523 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 641 655 - -
Chmo15g01074 1111 MobiDBLite consensus disorder prediction 808 827 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g01074 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
49290 Chmo15g01074 Chmo16g00722
49291 Chmo15g01074 Chmo17g00627
49292 Chmo15g01074 Chmo18g00716
49293 Chmo15g01074 Chmo22g05586
49294 Chmo15g01074 Chmo24g05671
213771 Chmo14g01124 Chmo15g01074
226378 Chmo15g01074 Chmo13g01222
239118 Chmo13g01222 Chmo15g01074
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:62048540 Chmo23g05643 Chmo-Chr23:320662302 dispersed
Chmo Chmo-Chr13:64523722 Chmo15g01074 Chmo-Chr15:62048540 wgd
Chmo Chmo-Chr14:59495791 Chmo15g01074 Chmo-Chr15:62048540 wgd
Chmo Chmo-Chr15:62048540 Chmo16g00722 Chmo-Chr16:31482702 wgd
Chmo Chmo-Chr15:62048540 Chmo17g00627 Chmo-Chr17:27463003 wgd
Chmo Chmo-Chr15:62048540 Chmo18g00716 Chmo-Chr18:31480296 wgd
Chmo Chmo-Chr15:62048540 Chmo22g05586 Chmo-Chr22:321477894 wgd
Chmo Chmo-Chr15:62048540 Chmo24g05671 Chmo-Chr24:323078113 wgd