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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g01127 ATGGCGAGAATTCCATGGGAGCCGTATGACGATTATGGAGAAAATGTAAGATGGGCAAGACATTATTGTTCGAATCATCAGATATTGTTGGTTGGAGAAGGGGATTTCTCATTTTCTTACAGTCTTGCTATGGCTTTTGGAGATGCTTCTAATATTGTAGCTACTTCTCTTGATTCTTATGATGTTGTGATCAAGAAGTACAAGAAAGCAAAAGCAAACTTGGAAATTTTGTATAGGTGTGGAGCACAGTTATTACATGGAGTCGATGCAATGAAAATGAAGCTTCATACTGATCTACAAATGAGAAAGTTTGACCGCATTGTTTACAACTTTCCACATGCTGGTTTTCTTGGGAAAGAAAGCGATAATCGTGTTATTACGCAGCATAAAAATCTGGTGTGTGGTTTCTTTAAGAACGCAAGTAAAATGTTGCATCCATACGGTCAAGTCCATGTATCCCACAAAACTACGAACCCATTTGACTTATGGAATATTGAAGAACTCGCTTCTCAAAGCTCTTTATCATTGTTCGAACGTGTGAAATTCAAGATTGAAGATTATCCTGGTTACAACAACAAAAGAGGAGAAGGTACAAGATCAGACAGCCCATTTCCTTTAGGAGAGTGCTGTACTTTCAAATTCAGATTATATTCAGAATCCAACGAATCAATCGGCTCACATAGTAGAAGAACTCAAGAACCCCAAATGTGTTCATCAGAAAGAGCGTACCCAAATATTGTTATGAATCATGCTCCTATTGTGAACAATAATCAATGCTATCGGGTTTTTAGGGAATATTTTGATCATGCACTTTCAACATTTGGGCAAGCTGATGACTATATTTCTCATTCTGTTCTGCATATGTTGAGGATCGGGTTTGAAAGATGCAGTGCTGAAGGTCATGTAAATCCCTTTAATGATTACATAAGTCATTTGAAAGAGCTTCAATATATAAGTAAAGGAAGGATAACATATATGCAGAACCGTTTACTGGAAATAGATCGACCGTATGGCTTGTAG 1020 37.25 MARIPWEPYDDYGENVRWARHYCSNHQILLVGEGDFSFSYSLAMAFGDASNIVATSLDSYDVVIKKYKKAKANLEILYRCGAQLLHGVDAMKMKLHTDLQMRKFDRIVYNFPHAGFLGKESDNRVITQHKNLVCGFFKNASKMLHPYGQVHVSHKTTNPFDLWNIEELASQSSLSLFERVKFKIEDYPGYNNKRGEGTRSDSPFPLGECCTFKFRLYSESNESIGSHSRRTQEPQMCSSERAYPNIVMNHAPIVNNNQCYRVFREYFDHALSTFGQADDYISHSVLHMLRIGFERCSAEGHVNPFNDYISHLKELQYISKGRITYMQNRLLEIDRPYGL 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g01127 339 PANTHER PHENYLALANYL-TRNA SYNTHETASE 21 205 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
Chmo15g01127 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 29 187 IPR029063 -
Chmo15g01127 339 FunFam Os09g0479300 protein 26 177 - -
Chmo15g01127 339 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 29 194 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g01127 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:62122292 Chmo15g01127 Chmo-Chr15:64078822 dispersed
Chmo Chmo-Chr14:62185780 Chmo15g01127 Chmo-Chr15:64078822 dispersed
Chmo Chmo-Chr15:64078822 Chmo4g00854 Chmo-Chr4:42589147 dispersed
Chmo Chmo-Chr15:64078822 Chmo15g01128 Chmo-Chr15:64084181 tandem
Chmo Chmo-Chr13:67046484 Chmo15g01127 Chmo-Chr15:64078822 wgd