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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g01176 ATGGATGCCGAAAGAGCATCTCTTCTAGCAAAACGAAGAGATATCACTCGCACGAAATCTAGTGCTCACGATGAGTTACACAGTTTCAGGTCATGGCTACAGTGGATGTGTGTCGATCAATCCACACATTGGACGTTTTGTCTTTCTTGGTTTGTTTTCATAGTTTTTGCTATCGTGATTCCTATCTTATCGCATTTCTTTCTAGCATGTAGTGGCTGCGATAATAGACATGAAAGGCCTTATGATAGGCTTGTTCAGTTGTCACTTACTAGCATTGCCACACTTTCGTTCGTTTGTTTGTCCCAGTTTGTTAGATATTATGGACTTCGTAGGTTTTTGTTTTTTGATAAGCTTTGTAATGAAAGTGAGACTGTTCGCAGAGGTTATACGCAACAACTCAATAGCTCGCTTAAAATAGTCTTCATATTTGTTGCCCCATGTTTTACCGCCGAGGCTGCATATAAGATCTGGTGGTACAGTTCAGGAGCTACCACTATACCATTCTTGGGTAACACTATTGTGATTAACATCCTAGCATGCTCTTTAGAGCTCTGTTCTTGGCTCTATAGAACCTTAGTGTTCTTCCTAGTTTGTGTCCTGTTCCGTCTTATTTGTCATCTACAAATCCTCCGTCTACAAGATTTCGCTCAGGTGTTCCATGTAGACTCTGATGTTGAGTATGTAATGAGGGAACATCTAAGGATTAGGAGGCATCTTCGCATCATAAGTCATAGATACCGTATCTTTATAATGTGGGCCCTCATTCTTGTCACAATCAGTCAATTTGCAGCTCTTCTTGACACTACACGGTCTAAAGCAGATCTTAGCATCTTCAAAACTGGCGAACTTGCAATTATTTCTGTAAGCTTACTTGCTGGACTAATGATACTACTAAGGAGTGCCACCAGGATCACCCATAAGGCTCTAGGCGTGACGTGCCTGGCTACTAAGTGGCATGTGTGTGCAACCATCGACTCCTTTGATACACCTGAACTAGAAACAGAAACCCCGCCTACCACTGCTATGGGAAACCAAGTTTTCCCTCATGATGCATCATCTGATAATGAGGATGTTGGTAGTGAAGACGAGTTAGATAACACTAAACTAATACCTGCTTATGCTTCAAGTACCATCTCATTCCAGAAAAGGCAAGCCTTAGTGACGTATTTTGAGAACAACAGAGCGGGGATAACAGTTTTTGGATTTATGCTAGATAGGACTACATTGCACACCATAGTGATGATAGAGATGTCACTCGTGTTGTGGTTGCTTGGAAAGACTGTCGGTATCTCTTAA 1296 41.67 MDAERASLLAKRRDITRTKSSAHDELHSFRSWLQWMCVDQSTHWTFCLSWFVFIVFAIVIPILSHFFLACSGCDNRHERPYDRLVQLSLTSIATLSFVCLSQFVRYYGLRRFLFFDKLCNESETVRRGYTQQLNSSLKIVFIFVAPCFTAEAAYKIWWYSSGATTIPFLGNTIVINILACSLELCSWLYRTLVFFLVCVLFRLICHLQILRLQDFAQVFHVDSDVEYVMREHLRIRRHLRIISHRYRIFIMWALILVTISQFAALLDTTRSKADLSIFKTGELAIISVSLLAGLMILLRSATRITHKALGVTCLATKWHVCATIDSFDTPELETETPPTTAMGNQVFPHDASSDNEDVGSEDELDNTKLIPAYASSTISFQKRQALVTYFENNRAGITVFGFMLDRTTLHTIVMIEMSLVLWLLGKTVGIS 431
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g01176 431 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 10 430 IPR021924 -
Chmo15g01176 431 Pfam Protein of unknown function (DUF3537) 24 415 IPR021924 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g01176 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
49344 Chmo15g01176 Chmo22g05337
49345 Chmo15g01176 Chmo23g05248
49346 Chmo15g01176 Chmo24g05353
226419 Chmo15g01176 Chmo13g01355
239159 Chmo13g01355 Chmo15g01176
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:67573954 Chmo23g05249 Chmo-Chr23:304070798 dispersed
Chmo Chmo-Chr11:5552376 Chmo15g01176 Chmo-Chr15:67573954 transposed
Chmo Chmo-Chr13:70375564 Chmo15g01176 Chmo-Chr15:67573954 wgd
Chmo Chmo-Chr15:67573954 Chmo22g05336 Chmo-Chr22:312203125 wgd
Chmo Chmo-Chr15:67573954 Chmo23g05248 Chmo-Chr23:304050897 wgd
Chmo Chmo-Chr15:67573954 Chmo24g05353 Chmo-Chr24:309917337 wgd