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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g01208 ATGAAGACTAAGAGCAATCAGGTAACCAAGAGCAAGCCAGAAATACAAACCCAAGCTTCACAGGAGTCCCCAAGTGACCAACATAACGATGCTACAGAGGCTCCTGTTCCTGACACTGGATCAGCCTCCATTTCGAGCAATGACAACAGAAAAGTTTCTCGAGAGGATATTGAACTTGTCCAGAACTTGATAGAACGCTGTTTGCAGCTGTATATGAACAAAGACGAGGTTGTGAAAACCTTACTAAATCGTGCAAGGATAGATCCTGGATTTACAGCTTTAGTGTGGCAGAAATTGGAAGAAGAGAATGCAGACTTTTTTAGAGCCTACTACATAAGGCTGAAACTGAAGAAGCAGATCATCCTGTTTAATCATTTGCTTGAACATCAGTACCATCTTACCAAGCATCCAGTGCATCCAAGGCTTCCTCTTGCTCCTATACAAAATGGCATCCATCCTATGCCAGTTAACAACTTACCAATGGGGTACCCTGTTCTACCACAACCTTCAATGGCAACTACTGGCCAACCTCATATGAATGCCATTGGTATGTCCAATTGTCATGTAGTCAATGGAGTGCCTGCTTCAAGTAACTTCCATCCAATGCGGATGAACTCTGGAAAGGGAAGTATGGGGATGGATAGTAGTGCAGCTGATGCCACACCAGCTATTCCAGGGAATGGGGCAATATCACCCATGTCAGATATGCCTATGAGCCCTACATCAGCATCCAGTGGTCATTTCCCGTTTACTACATCTGAAATATCGGGAATGGGAGTAGACACATCAGCTCTTGATACAGCTTTTACATCTGACGTGGCAAGTTCTGTAGACTTGCATCTGCAACCTGATAATGGAACTTCTAGAGCTTTTGGTCATATCCCTTGGAATTTCAGCCTTTCAGATCTTACAGCAGATTTGTCAAATTTGGGAGATCTCGGAGCTCTTGGAAACTATCCTGGCTCCCCCTTTCTGCCATCTGATTCAGATTTATTACTTGATTCCCCGGAACAAGAGGACATTGGTAAGAACACTATATCCCCAGTTCTATGTTTATTTAGCTTCATACTTCCAGATAAAAAAGGTGTGCTAATTAAAACTCCTTTTGCTTTATGGCATTATAACTTGTTATCAAATTGA 1140 42.63 MKTKSNQVTKSKPEIQTQASQESPSDQHNDATEAPVPDTGSASISSNDNRKVSREDIELVQNLIERCLQLYMNKDEVVKTLLNRARIDPGFTALVWQKLEEENADFFRAYYIRLKLKKQIILFNHLLEHQYHLTKHPVHPRLPLAPIQNGIHPMPVNNLPMGYPVLPQPSMATTGQPHMNAIGMSNCHVVNGVPASSNFHPMRMNSGKGSMGMDSSAADATPAIPGNGAISPMSDMPMSPTSASSGHFPFTTSEISGMGVDTSALDTAFTSDVASSVDLHLQPDNGTSRAFGHIPWNFSLSDLTADLSNLGDLGALGNYPGSPFLPSDSDLLLDSPEQEDIGKNTISPVLCLFSFILPDKKGVLIKTPFALWHYNLLSN 379
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g01208 379 PANTHER OS02G0137100 PROTEIN 54 327 IPR006476 -
Chmo15g01208 379 Pfam Plant protein 1589 of unknown function (A-thal-3526) 60 111 IPR006476 -
Chmo15g01208 379 NCBIfam TIGR01589 domain 57 113 IPR006476 -
Chmo15g01208 379 MobiDBLite consensus disorder prediction 1 51 - -
Chmo15g01208 379 MobiDBLite consensus disorder prediction 1 48 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g01208 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
49373 Chmo15g01208 Chmo16g00863
49374 Chmo15g01208 Chmo16g00864
49375 Chmo15g01208 Chmo17g00767
49376 Chmo15g01208 Chmo18g00856
213804 Chmo14g01230 Chmo15g01208
226433 Chmo15g01208 Chmo13g01381
239173 Chmo13g01381 Chmo15g01208
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr15:70236926 Chmo16g00864 Chmo-Chr16:37059987 dispersed
Chmo Chmo-Chr13:72039955 Chmo15g01208 Chmo-Chr15:70236926 wgd
Chmo Chmo-Chr14:64537492 Chmo15g01208 Chmo-Chr15:70236926 wgd
Chmo Chmo-Chr15:70236926 Chmo16g00863 Chmo-Chr16:37058661 wgd
Chmo Chmo-Chr15:70236926 Chmo17g00767 Chmo-Chr17:31840591 wgd
Chmo Chmo-Chr15:70236926 Chmo18g00856 Chmo-Chr18:36244022 wgd