AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo16g03224 ATGATTGTGAAGACTAACCCTAGGCGCGTGGATTACACGCGCCGGAGAGATGAGGAGGAGGAGGACGATGAGGAAGGAGGTGGATTTGGTACGTTTGTGGTGAGATCAGATGAGAGAGAGGATGAGTCGGTATCGGGGACATTTGTGCGGCGGAGTGTAGGTGGAGGAATGTCGACGATGAGTAGAGCGGTAGCGAGTATGCAGGGAGTAGGGGAGGGGTTTGGGAAAGGGAGGGGGAAAACGTCTTCTCAAGATGGCGACGGAGGGCATTCGAGGAAACGGACGAGTAAAATGTCGTCTGGTTCCATTGCGGATAGTATTACTAGAGAAGATCCGTCTACTAAGTATGAATTGCTTCATGAACTTGGAAAAGGTTCTTATGGGTCTGTCTACAAAGCTCGTGATTTAAAAACTTCGGAAATGGTCGCAATTAAAGTGATATCATTATCTGAAGGGGAAGAAGGGTATGAAGAAATTCGTGGTGAAATAGAGATGTTGCAGCAATGCAGTCATCCTAATGTTGTTCGTTATCTAGGAAGCTACCAGGGTGAGGAGTACCTCTGGATTGTAATGGAGTATTGTGGTGGAGGAAGTGTTGCTGATTTGATGAATGTTACAGATGAACCTCTAGAGGAGTACCAAATAGCATATATATGTAAGGAAGCATTGAAGGGCTTATCCTATTTGCACTCGATCTTCAAGGTGCATCGTGATATCAAGGGTGGTAATATCTTGTTGACTGAACAAGGAGAGGTGAAGTTGGGTGATTTTGGTGTTGCTGCACAGCTGACAAGGACGATGTCCAAACGTAATACGTTTATTGGTACTCCCCACTGGATGGCTCCTGAAGTTATCCAGGAGAGCCGATATGATGGGAAGGTGGATGTGTGGGCTCTTGGGGTGTCTGCAATCGAAATGGCAGAGGGCCTTCCTCCAAGATCAAATGTGCATCCAATGAGGGTGTTATTTATGATCTCCATCGAACCTGCTCCAATGCTTGAAGATAAAGAAAAATGGTCTCTTGTGTTCCATGATTTCATTGCAAAATGCCTTACAAAAGACCCTCGTATACGTCCCACTGCATCTGAGCTACTAAAGCATAAATTCATAGAAAAATGCAAAAGTGGAGCTTCTGCAATGGTGCCAAAGCTCGAGAAGGCAAAGATAAATAGGGCTGCAATGGCATTGGAAGCAGAACACGTTTCTGAGACCATACCAGGATATGGGACACTTGGACCGAAAGTGAATGAAGACTTTGGAGATACCGTCCCTTCTAAACCTCAACAAGTGCCCAATGGAGTACCTGCTGTAGGTGGTACAGTAAAAGCAGGTGGTTTGGAAGAGGCTGAAGAAGGTGATTTCGGAAGTGTTATAATTCATGGTGGAGTGGATATACATAAGACAACTGCTAAAACACCGCTTCCAGCAGCGAAGGACCCCTCACACTCTTCAGCACATGGTCAAAATTCATCAATGGCTGATCCTGGGGAAGATTCAGTTAGTCCCTGGTTGACCAAAAAAGTTGGGGGATCTGCAGATACATTTCGTGCTGTTGAATCACCATCTACTGAACACACAGCACAAGCTATTGGAAGCAACGGCGCTGTCATCAGTGGCACAACCAAGAACGAAGGTGTTAATCGCAAAGCACTGGACAAGCTTTGGTCCATATATGCCGCTGGTAACACAGTGCCCATTCCGTTTTTGAGGGCAACTGATATCTCTCCCATTGCATTGTTGTCTGAGAATGTGCTTGGAAGTCAGCATCTAGATAATGTTGGCAACGTTGCTGTAGAAGCATTACAAGAACTTTTCACAAGTGATGGGCAATCTAAAAAGAGTCGAAGACAAAACGAGCTGCCTCTTCCACCGAGTGTTTATCAGAGACTCACTTCAAGTCCAACATTGATGAATCTTGCGCAGGCTTTATCATATCATAAAATGTGCTACGAAGAGATGCCACTGCAAGAACTACAAGCGACGCAGGAACAACAAACCATTCAGAACCTCTGTGACACCCTTAGAACTATTTTGCGGTTATAA 2043 45.33 MIVKTNPRRVDYTRRRDEEEEDDEEGGGFGTFVVRSDEREDESVSGTFVRRSVGGGMSTMSRAVASMQGVGEGFGKGRGKTSSQDGDGGHSRKRTSKMSSGSIADSITREDPSTKYELLHELGKGSYGSVYKARDLKTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTDEPLEEYQIAYICKEALKGLSYLHSIFKVHRDIKGGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSNVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFIAKCLTKDPRIRPTASELLKHKFIEKCKSGASAMVPKLEKAKINRAAMALEAEHVSETIPGYGTLGPKVNEDFGDTVPSKPQQVPNGVPAVGGTVKAGGLEEAEEGDFGSVIIHGGVDIHKTTAKTPLPAAKDPSHSSAHGQNSSMADPGEDSVSPWLTKKVGGSADTFRAVESPSTEHTAQAIGSNGAVISGTTKNEGVNRKALDKLWSIYAAGNTVPIPFLRATDISPIALLSENVLGSQHLDNVGNVAVEALQELFTSDGQSKKSRRQNELPLPPSVYQRLTSSPTLMNLAQALSYHKMCYEEMPLQELQATQEQQTIQNLCDTLRTILRL 680
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo16g03224 680 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524(InterPro)
Chmo16g03224 680 MobiDBLite consensus disorder prediction 516 540 - -
Chmo16g03224 680 MobiDBLite consensus disorder prediction 472 540 - -
Chmo16g03224 680 Pfam Protein kinase domain 116 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chmo16g03224 680 MobiDBLite consensus disorder prediction 1 54 - -
Chmo16g03224 680 SMART serkin-6 116 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chmo16g03224 680 MobiDBLite consensus disorder prediction 95 109 - -
Chmo16g03224 680 Gene3D Transferase(Phosphotransferase) domain 1 112 404 - -
Chmo16g03224 680 SUPERFAMILY Protein kinase-like (PK-like) 115 371 IPR011009 -
Chmo16g03224 680 FunFam Aurora kinase A 108 197 - -
Chmo16g03224 680 MobiDBLite consensus disorder prediction 482 496 - -
Chmo16g03224 680 PANTHER SERINE-THREONINE-PROTEIN KINASE TAO 92 403 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Chmo16g03224 680 ProSiteProfiles Protein kinase domain profile. 116 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chmo16g03224 680 MobiDBLite consensus disorder prediction 70 110 - -
Chmo16g03224 680 FunFam serine-threonine-protein kinase dst1 isoform X1 113 404 - -
Chmo16g03224 680 CDD STKc-MAP4K3-like 115 370 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo16g03224 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1316945 Chmo Chmo16g03224 Chmo-Chr16:211516132 Chmo17g03378 Chmo-Chr17:230037006
1403892 Chmo Chmo16g03222 Chmo-Chr16:211252977 Chmo16g03224 Chmo-Chr16:211516132
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chmo3g01950 . 1 690 MAP Kinase Kinase Kinase Kinase Protein gene family AT3G15220 62.695 0.0 836.0
Chmo16g03253 . 18 269 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G69220 39.925 5.55e-28 109.0
Chmo16g03252 . 290 836 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G69220 68.231 0.0 739.0
Chmo16g03224 . 185 836 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G69220 68.182 0.0 862.0
Chmo4g02300 . 7 673 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 63.028 0.0 860.0
Chmo6g01779 . 7 666 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 63.088 0.0 842.0
Chmo9g03122 . 467 673 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 41.176 3.29e-40 144.0
Chmo9g03123 . 6 360 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 82.913 0.0 644.0
Chmo27g00661 . 224 257 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 62.857 1.86e-06 40.4
Chmo26g00041 . 7 476 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G14480 50.586 4.85e-157 454.0
Chmo13g00866 . 1 690 MAP Kinase Kinase Kinase Kinase Protein gene family AT3G15220 57.489 0.0 716.0
Chmo27g03231 . 40 709 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G10730 62.618 0.0 909.0
Chmo8g03083 . 4 673 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 61.23 0.0 832.0
Chmo14g00850 . 1 690 MAP Kinase Kinase Kinase Kinase Protein gene family AT3G15220 51.627 0.0 629.0
Chmo15g03463 ACH,CSH 249 504 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G69220 27.203 1.72e-24 106.0
Chmo22g04057 . 141 248 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 81.481 1.96e-58 196.0
Chmo22g00728 . 174 683 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 47.145 3.31e-140 418.0
Chmo16g04509 . 63 262 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G53165 25.114 1.27e-07 53.1
Chmo18g02880 . 1 836 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G69220 59.139 0.0 888.0
Chmo23g00812 CSH 159 266 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G24100 63.889 2.02e-42 145.0
Chmo23g00809 . 5 683 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 53.09 0.0 697.0
Chmo16g01205 . 4 684 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 55.831 0.0 695.0
Chmo17g04800 . 63 262 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G53165 25.114 1.11e-07 53.5
Chmo19g00722 ACH 576 612 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 64.865 3.20e-07 47.0
Chmo18g01138 . 4 428 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 71.071 0.0 640.0
Chmo1g02000 ACH 178 690 MAP Kinase Kinase Kinase Kinase Protein gene family AT3G15220 54.924 0.0 530.0
Chmo25g03299 . 40 709 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G10730 62.432 0.0 902.0
Chmo3g05188 . 57 144 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 44.211 1.72e-21 87.8
Chmo17g03378 . 1 836 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G69220 59.371 0.0 889.0
Chmo25g01350 . 6 647 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 60.546 0.0 773.0
Chmo27g01306 . 6 647 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 63.54 0.0 832.0
Chmo7g02955 . 4 667 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 61.76 0.0 831.0
Chmo17g04461 . 222 247 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 76.923 3.83e-08 45.1
Chmo15g00767 . 1 442 MAP Kinase Kinase Kinase Kinase Protein gene family AT3G15220 65.848 0.0 566.0
Chmo15g00766 ACH 451 690 MAP Kinase Kinase Kinase Kinase Protein gene family AT3G15220 46.64 3.06e-53 181.0
Chmo5g02154 . 7 661 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 63.757 0.0 857.0
Chmo27g00042 . 7 476 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G14480 50.392 1.93e-158 458.0
Chmo24g00822 CSH 174 683 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 46.961 4.99e-140 418.0
Chmo26g03321 . 40 709 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G10730 61.312 0.0 871.0
Chmo16g01191 . 4 428 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 71.071 0.0 639.0
Chmo25g00036 . 7 476 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G14480 50.586 4.21e-157 455.0
Chmo26g01498 . 6 674 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 62.064 0.0 836.0
Chmo25g01290 . 89 263 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G53165 24.87 1.14e-06 49.3
Chmo9g00641 . 116 184 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 51.316 4.27e-15 72.4
Chmo21g02063 . 214 247 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G24100 61.765 9.80e-09 47.8
Chmo16g03222 . 1 836 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G69220 59.139 0.0 887.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chmo Pkinase 1.9e-70 CL0016 PK STE_STE20-Pl