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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo18g02878 ATGCCAACATTAACAAAGCTGTATACGATGAAAGAAGCATCAGAACATAATTCTGCTGGTGATTGTTGGGTTGTTATTGACGGCAAGGTGTATGATGTGTCATCGTATCTGGACGACCATCCAGGTGGAGATGATGTCCTCCTTCAGGCTACTGGGAAAGACGCTACAGAAGAATTTGAAGACGCAGGTCATAGCAAAACCGCTAGGGAACAAATGGAGACTTTTTGTGTCGGTGAGTTGGACCCATCAGACATCCCACAACTTGAGGTTGTCGCAGAGAAACAAAAGAATTACGTCCCTGAGAAGCTTGTTCAGTTGAGTAAGCAATACTGGGCTGTTCCTGTGGTAGCTGTTGGCATATCTTTGGTGGTCACCATCTTGTACTTGCGCAAGAAGTAG 399 45.36 MPTLTKLYTMKEASEHNSAGDCWVVIDGKVYDVSSYLDDHPGGDDVLLQATGKDATEEFEDAGHSKTAREQMETFCVGELDPSDIPQLEVVAEKQKNYVPEKLVQLSKQYWAVPVVAVGISLVVTILYLRKK 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo18g02878 132 Pfam Cytochrome b5-like Heme-Steroid binding domain 9 81 IPR001199 -
Chmo18g02878 132 PANTHER CYTOCHROME B5 4 128 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Chmo18g02878 132 SMART Cyt-b5-2 8 81 IPR001199 -
Chmo18g02878 132 FunFam Cytochrome b5 type B 3 85 - -
Chmo18g02878 132 Gene3D - 4 93 IPR036400 -
Chmo18g02878 132 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Chmo18g02878 132 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Chmo18g02878 132 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Chmo18g02878 132 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Chmo18g02878 132 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 89 IPR036400 -
Chmo18g02878 132 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Chmo18g02878 132 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo18g02878 K23490 cytochrome b5
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Event-related genes

Select Gene_1 Gene_2 Event_name
241238 Chmo18g02878 Chmo17g03375
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1326747 Chmo Chmo18g02878 Chmo-Chr18:233110770 Chmo22g03207 Chmo-Chr22:217477373
1513712 Chmo Chmo17g03375 Chmo-Chr17:229652114 Chmo18g02878 Chmo-Chr18:233110770
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chmo19g02294 CSH 6 83 NADPH P450 reductases gene family AT1G26340 38.462 2.50e-14 65.9
Chmo5g00914 ACH,CSH 1 128 NADPH P450 reductases gene family AT5G53560 54.264 2.35e-48 149.0
Chmo16g05298 CSH 1 130 NADPH P450 reductases gene family AT2G32720 43.939 4.76e-40 129.0
Chmo12g01644 . 158 205 NADPH P450 reductases gene family AT5G17770 79.167 7.86e-21 80.9
Chmo20g01696 CSH 6 83 NADPH P450 reductases gene family AT1G26340 38.462 2.38e-14 65.9
Chmo24g04695 CSH 4 281 NADPH P450 reductases gene family AT5G17770 68.929 5.13e-140 394.0
Chmo23g03185 ACH,CSH 1 133 NADPH P450 reductases gene family AT5G53560 70.677 1.15e-69 204.0
Chmo14g04175 . 1 134 NADPH P450 reductases gene family AT5G53560 52.941 6.35e-46 144.0
Chmo15g04100 CSH 1 126 NADPH P450 reductases gene family AT5G53560 53.906 1.29e-45 143.0
Chmo14g04176 ACH,CSH 1 124 NADPH P450 reductases gene family AT5G53560 50.806 4.22e-41 132.0
Chmo9g04769 . 68 133 NADPH P450 reductases gene family AT5G53560 57.576 6.00e-23 83.6
Chmo1g03328 ACH,CSH 38 273 NADPH P450 reductases gene family AT5G17770 35.409 2.57e-43 157.0
Chmo3g00902 CSH 39 281 NADPH P450 reductases gene family AT5G17770 39.847 7.98e-65 202.0
Chmo7g00275 CSH 2 120 NADPH P450 reductases gene family AT1G60660 63.025 6.03e-52 158.0
Chmo9g00751 . 48 133 NADPH P450 reductases gene family AT5G53560 58.14 1.58e-32 110.0
Chmo23g01890 . 142 203 NADPH P450 reductases gene family AT5G17770 51.562 2.87e-12 60.5
Chmo18g02878 CSH 1 134 NADPH P450 reductases gene family AT1G26340 61.194 3.84e-57 172.0
Chmo26g00251 . 65 273 NADPH P450 reductases gene family AT5G17770 35.065 1.75e-39 140.0
Chmo25g00884 . 78 273 NADPH P450 reductases gene family AT5G17770 36.239 3.52e-37 130.0
Chmo13g03359 . 7 133 NADPH P450 reductases gene family AT2G32720 76.378 3.41e-74 215.0
Chmo15g03295 . 7 133 NADPH P450 reductases gene family AT2G32720 76.378 3.41e-74 215.0
Chmo18g05188 CSH 1 129 NADPH P450 reductases gene family AT2G32720 46.212 6.92e-40 129.0
Chmo14g02989 . 31 281 NADPH P450 reductases gene family AT5G17770 83.665 1.66e-161 448.0
Chmo17g03375 CSH 1 134 NADPH P450 reductases gene family AT1G26340 61.194 1.18e-57 173.0
Chmo2g02899 ACH,CSH 38 273 NADPH P450 reductases gene family AT5G17770 35.409 2.08e-43 157.0
Chmo14g03218 . 7 133 NADPH P450 reductases gene family AT2G32720 76.378 3.41e-74 215.0
Chmo8g00407 CSH 2 120 NADPH P450 reductases gene family AT1G60660 62.185 3.60e-51 156.0
Chmo9g00750 . 48 133 NADPH P450 reductases gene family AT5G53560 58.14 1.58e-32 110.0
Chmo27g01991 . 142 200 NADPH P450 reductases gene family AT5G17770 57.377 3.43e-12 60.1
Chmo22g03207 ACH,CSH 1 133 NADPH P450 reductases gene family AT5G53560 70.677 1.15e-69 204.0
Chmo13g03077 . 31 281 NADPH P450 reductases gene family AT5G17770 83.267 2.26e-161 447.0
Chmo2g00678 CSH 39 281 NADPH P450 reductases gene family AT5G17770 39.847 4.83e-64 202.0
Chmo13g04297 ACH,CSH 1 126 NADPH P450 reductases gene family AT5G53560 53.906 1.29e-45 143.0
Chmo21g02403 CSH 1 134 NADPH P450 reductases gene family AT5G48810 50.746 2.10e-47 148.0
Chmo4g02829 . 38 273 NADPH P450 reductases gene family AT5G17770 37.984 2.16e-48 171.0
Chmo4g02831 . 38 273 NADPH P450 reductases gene family AT5G17770 38.76 7.61e-49 172.0
Chmo5g02273 . 4 196 NADPH P450 reductases gene family AT5G17770 68.205 1.98e-90 266.0
Chmoscaffold_4587g00001 . 48 133 NADPH P450 reductases gene family AT5G53560 58.14 1.58e-32 110.0
Chmo5g02633 CSH 38 273 NADPH P450 reductases gene family AT5G17770 38.372 5.69e-49 173.0
Chmo12g02369 . 136 273 NADPH P450 reductases gene family AT5G17770 38.732 3.37e-25 101.0
Chmo6g00487 . 4 196 NADPH P450 reductases gene family AT5G17770 68.205 1.46e-90 266.0
Chmo3g03303 . 38 273 NADPH P450 reductases gene family AT5G17770 35.409 1.48e-42 155.0
Chmo21g00604 . 65 133 NADPH P450 reductases gene family AT2G32720 71.014 6.19e-30 102.0
Chmo21g00594 . 72 133 NADPH P450 reductases gene family AT2G32720 74.194 5.95e-30 104.0
Chmo22g04702 CSH 4 281 NADPH P450 reductases gene family AT5G17770 64.643 6.85e-125 354.0
Chmo23g04695 CSH 4 281 NADPH P450 reductases gene family AT5G17770 68.571 4.00e-138 389.0
Chmo7g04763 ACH 2 133 NADPH P450 reductases gene family AT5G53560 66.667 2.17e-67 198.0
Chmo17g05564 CSH 1 130 NADPH P450 reductases gene family AT2G32720 46.97 1.00e-42 135.0
Chmo1g00946 CSH 39 281 NADPH P450 reductases gene family AT5G17770 39.847 2.44e-64 203.0
Chmo12g00295 . 27 113 NADPH P450 reductases gene family AT2G32720 66.667 1.45e-41 132.0
Chmo4g00971 ACH,CSH 1 128 NADPH P450 reductases gene family AT5G53560 57.364 4.30e-54 164.0
Chmo4g00974 ACH,CSH 1 132 NADPH P450 reductases gene family AT5G53560 57.576 1.59e-56 171.0
Chmo4g02015 . 97 273 NADPH P450 reductases gene family AT5G17770 33.862 8.71e-30 108.0
Chmo4g02016 . 8 80 NADPH P450 reductases gene family AT2G32720 43.038 5.61e-19 78.6
Chmo20g02239 CSH 1 134 NADPH P450 reductases gene family AT5G48810 50.746 2.10e-47 148.0
Chmo6g00869 ACH,CSH 1 132 NADPH P450 reductases gene family AT5G53560 57.576 1.59e-56 171.0
Chmo6g00866 ACH,CSH 1 128 NADPH P450 reductases gene family AT5G53560 57.364 4.30e-54 164.0