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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo25g01423 ATGGGGTCTGGTCAATGGTCTGTTGTACAGAGATCTCCACTCGGGACCGACTCTCCAACAAGTGAATATGTGCCAGAAACTGGATGTCTTTCGATCATCGTCCTTGGTGCTTCTGGTGATCTCGCAAAAAAGAAGACGTTTCCTGCGCTGTTTCATCTCTACCGTCAGGGGTTTATTCAGTCGCATGATGTTCATATTTTTGGTTATGCTAGGACCAAGATTTCGGACAACGATTTGAGAGATCGTATTCGTGGATATCTTACACCATGCAAAGGGTGTGAGGAAACACACGAGGAAGATGTAAACCAGTTTCTGCAATTGATCAAATATGTAGCTGGTGCTTATGATACCGAGGAGGGATTTCGTTTGTTGGACAAGGCAATATCAGAGTACGAAGTGTCGAAAAACAGTACAGATGGATCATCAAGGAGACTCTTCTATCTCGCTCTTCCTCCATCTGTTTATCCATCTGTCTGCAAAATGATAAAGAGTTATTGCATGAATAAATCTGATCTTGGTGGTTGGACTCGAATTGTTGTTGAGAAGCCATTTGGTAGGGACTTGCAGTCTGCTGAAGAACTTAGTGCTCAGATTGGGGAATTGTTTGAGGAACCACAGATATACCGTATAGATCATTATTTGGGAAAAGAGTTGGTGCAGAACTTGATGGTACTTCGTTTTGCAAATCGTTTCTTCTTGCCACTCTGGAACCGCGACAACATCTCTAATATACAGATTGTGTTTAGAGAGGATTTTGGAACTGACGGCCGTGGTGGATATTTTGATCAATATGGAATTATCAGGGACATCATTCAAAATCATCTGTTACAGGTGCTCTGCCTAGTTGCTATGGAGAAGCCTGTTTCTCTAAAGCCTGAGCATGTTCGAGATGAAAAAGTCAAGGTTCTTCAATCTGTTATCCCAATTGAAGACAGCGAGGTTGTCCTTGGACAGTATGAAGGCTATACGGAAGATCCTACAGTTCCTGACAACTCTAACACTCCCACCTTTGCAACAATGATTCTCAGGATTCACAATGAAAGATGGGAAGGTGTTCCCTTTATTATAAAGGCAGGGAAAGCATTGAACTCAAGAAAGGCAGAAATTCGGTTGCAATTTAAGGATGTTCCTGGCGACATATATAAATGTAAAAAGCAAGGGAGAAATGAGTTTGTCATCAGACTGCAACCTTCGGAGGCCATGTACATGAAGCTAACAGTCAAGGAGCCTGGGCTTGAGATGAACACCGTTCAGAGTGAATTAGACTTGTCGTATAGGCAGAGGTATCAACAAACCATCATTCCAGAGGCTTATGAACGTTTGATTCTTGACACAATAAGAGGCGATCAACAGCATTTTGTTCGCAGAGATGAGCTGAAGGCTGCCTGGGAGATTTTCACTCCTCTTCTGCACAAAATTGACAGAGGTGAAATGAAATCACTGCCATACAAGCCCGGTAGCAGAGGCCCTGAGGAAGCCGATAAGTTGGCTGAAAAATCAGGTTTTGTTCAAACTCATGGCTATATATGGATACCCCCAACTTTGTAG 1548 42.89 MGSGQWSVVQRSPLGTDSPTSEYVPETGCLSIIVLGASGDLAKKKTFPALFHLYRQGFIQSHDVHIFGYARTKISDNDLRDRIRGYLTPCKGCEETHEEDVNQFLQLIKYVAGAYDTEEGFRLLDKAISEYEVSKNSTDGSSRRLFYLALPPSVYPSVCKMIKSYCMNKSDLGGWTRIVVEKPFGRDLQSAEELSAQIGELFEEPQIYRIDHYLGKELVQNLMVLRFANRFFLPLWNRDNISNIQIVFREDFGTDGRGGYFDQYGIIRDIIQNHLLQVLCLVAMEKPVSLKPEHVRDEKVKVLQSVIPIEDSEVVLGQYEGYTEDPTVPDNSNTPTFATMILRIHNERWEGVPFIIKAGKALNSRKAEIRLQFKDVPGDIYKCKKQGRNEFVIRLQPSEAMYMKLTVKEPGLEMNTVQSELDLSYRQRYQQTIIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHKIDRGEMKSLPYKPGSRGPEEADKLAEKSGFVQTHGYIWIPPTL 515
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo25g01423 515 NCBIfam glucose-6-phosphate dehydrogenase 31 502 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 211 508 - -
Chmo25g01423 515 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 29 512 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 211 217 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Chmo25g01423 515 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 33 221 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 Gene3D Dihydrodipicolinate Reductase; domain 2 210 505 - -
Chmo25g01423 515 PRINTS Glucose-6-phosphate dehydrogenase signature 177 190 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 PRINTS Glucose-6-phosphate dehydrogenase signature 201 229 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 PRINTS Glucose-6-phosphate dehydrogenase signature 253 270 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 PRINTS Glucose-6-phosphate dehydrogenase signature 271 287 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 PRINTS Glucose-6-phosphate dehydrogenase signature 348 374 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 27 510 IPR001282 GO:0004345(PANTHER)|GO:0005829(PANTHER)|GO:0006006(InterPro)|GO:0006006(PANTHER)|GO:0009051(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 MobiDBLite consensus disorder prediction 1 22 - -
Chmo25g01423 515 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 224 IPR036291 -
Chmo25g01423 515 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 223 501 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 PIRSF G6PD 14 507 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chmo25g01423 515 Gene3D - 28 209 - -
Chmo25g01423 515 FunFam Glucose-6-phosphate 1-dehydrogenase 211 504 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo25g01423 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
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Event-related genes

Select Gene_1 Gene_2 Event_name
56218 Chmo25g01423 Chmo4g02180
56219 Chmo25g01423 Chmo5g02049
56220 Chmo25g01423 Chmo6g01663
246116 Chmo27g01232 Chmo25g01423
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr25:120321845 Chmo27g03041 Chmo-Chr27:185717797 dispersed
Chmo Chmo-Chr25:120321845 Chmo26g01546 Chmo-Chr26:131348154 wgd
Chmo Chmo-Chr25:120321845 Chmo27g01232 Chmo-Chr27:100641529 wgd
Chmo Chmo-Chr25:120321845 Chmo4g02180 Chmo-Chr4:147832939 wgd
Chmo Chmo-Chr25:120321845 Chmo5g02049 Chmo-Chr5:146612732 wgd
Chmo Chmo-Chr25:120321845 Chmo6g01663 Chmo-Chr6:128680235 wgd