AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo25g01465 | ATGCCATCATTAATCCTAGAAGAACCACTTTTAACGCCAACCCAAGACAGATTCTGCATGTTCCCAATTCACTACCCTCAAATATGGGAAATGTACAAAAAAGCCCAAGCTTCATTCTGGACAGCAGAAGAAGTGGACTTATCATCAGATATCCGTCACTGGGAGTCGTTAACTAACGGAGAACGTCATTTCATTACACACGTTCTCGCGTTTTTCACGTCTTCTGATGGCATTGTGTTGGAGAATTTGGCTAGTAGGTTTATGAATGATGTCCAAGTAGCCGAAGCGAGGGCTTTTTACGGGTTTCAAATTGCGATAGAGAATATACATTCAGAGATGTATAGTTTGCTTTTGGAAACGTATGTTAAGGATGGGAAGGAGAAAGATAGGTTGTTTCGGGCAGTTGAGACAATTCCGTGTGTTGAGAAAAAGGCGAAGTGGGCGATGAAGTGGATTGATGGCTCGGAGTCGTTTGCTGAAAGGATTATTGCGTTTGCGTGTGTTGAAGGTATATTCTTTTCAGGAAGCTTTTGCGCGATATTTTGGTTAAAAAAGCGTGGCTTAATGCCAGGACTAACCTTCTCAAACGAGTTAATCTCACGAGACGAAGGCCTCCACTGCGATTTCGCATGCCTGCTCTACACTTTACTAAACAACAAACTAACCGAAGAACGCGTAAAATCCATAGTATCTGACGCAGTTGACATCGAACGTGAATTTGTTTGTGACGCATTACCATGTGCACTAGTTGGCATGAATGGTGAACTCATGAGTACGTATATCGAGTTTGTGGCTGATAGGTTATTGGTGTCCTTAGGATTTAGTAAAATGTACAATGTTTCGAACCCGTTTGATTGGATGGAATTGATTTCGTTACAAGGGAAGACGAATTTTTTCGAGAAGCGAGTAGGCGAGTATCAAAAGGCTTCGATTATGTCGAATTTGAATGGAAATGGTGGTGATCAACATGTGTTCAAGATGGATGAAGATTTTTGA | 996 | 41.57 | MPSLILEEPLLTPTQDRFCMFPIHYPQIWEMYKKAQASFWTAEEVDLSSDIRHWESLTNGERHFITHVLAFFTSSDGIVLENLASRFMNDVQVAEARAFYGFQIAIENIHSEMYSLLLETYVKDGKEKDRLFRAVETIPCVEKKAKWAMKWIDGSESFAERIIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLNNKLTEERVKSIVSDAVDIEREFVCDALPCALVGMNGELMSTYIEFVADRLLVSLGFSKMYNVSNPFDWMELISLQGKTNFFEKRVGEYQKASIMSNLNGNGGDQHVFKMDEDF | 331 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo25g01465 | 331 | PANTHER | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN | 8 | 331 | IPR000358 | GO:0009263(InterPro) | |
| Chmo25g01465 | 331 | CDD | RNRR2 | 18 | 292 | IPR033909 | GO:0009263(InterPro) | |
| Chmo25g01465 | 331 | ProSitePatterns | Ribonucleotide reductase small subunit signature. | 106 | 122 | IPR030475 | - | |
| Chmo25g01465 | 331 | Gene3D | Ribonucleotide Reductase, subunit A | 3 | 308 | IPR012348 | GO:0016491(InterPro) | |
| Chmo25g01465 | 331 | PIRSF | NrdB | 7 | 317 | IPR000358 | GO:0009263(InterPro) | |
| Chmo25g01465 | 331 | SUPERFAMILY | Ferritin-like | 5 | 308 | IPR009078 | - | |
| Chmo25g01465 | 331 | Pfam | Ribonucleotide reductase, small chain | 17 | 283 | IPR000358 | GO:0009263(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo25g01465 | K10808 | ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] | ||||
| Chmo25g01465 | K00526 | ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 56245 | Chmo25g01465 | Chmo7g02852 | |
| 56246 | Chmo25g01465 | Chmo8g02988 | |
| 56247 | Chmo25g01465 | Chmo9g03034 | |
| 207005 | Chmo25g01465 | Chmo27g01427 | |
| 221546 | Chmo25g01465 | Chmo26g01592 | |
| 246126 | Chmo27g01154 | Chmo25g01465 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr25:122261485 | Chmo2g01307 | Chmo-Chr2:60782423 | dispersed | |
| Chmo | Chmo-Chr25:122261485 | Chmo26g01592 | Chmo-Chr26:133249687 | wgd | |
| Chmo | Chmo-Chr25:122261485 | Chmo27g01427 | Chmo-Chr27:110993992 | wgd | |
| Chmo | Chmo-Chr25:122261485 | Chmo7g02852 | Chmo-Chr7:186903389 | wgd | |
| Chmo | Chmo-Chr25:122261485 | Chmo8g02988 | Chmo-Chr8:192997795 | wgd | |
| Chmo | Chmo-Chr25:122261485 | Chmo9g03034 | Chmo-Chr9:193876790 | wgd |