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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo25g01491 ATGGAGGGTGGTTCATGGATGGTGCTTGAAAACGATGCTTTTTATGTACCAACACTGAGTAGCTCAGTTGGATTGAAGCCTTCAGAAGATTACACAGCAATCGAGCTAGTTGGCACAGACAGACCTGGATTGTTATCTGAAGTATCTGCAGTACTAACAGATCTTGGTTGTAATGTGGTGAATGCTGAAATATGGACTCACAACGCTAGAGCTGCAGCCGTGGTACACGTCACAGATGAGAAAACGAGATGTGCAGCTGAAGACCCAAAGAGGCTCTTAACTATTAAGAAACTGCTTTGTAATGTTCTTAAGGGAAACAATGACTTGAAAACTGCAAAAAGGACACTTTCGGCTCCTGGTTACATGCACAGGCAGAGAAGATTACATCAAATTATGTTTGCTGAGTGGGATTATGAAAAGATTGAAAGGGCGGAACAGGAAGATAGGTTAAGGCCACAGGTTACTGTTTTAGATTGCGTTGAGAAGGATTACACGGAGTATGTAGTCTTCCATGGAGTTGTTATTTGA 528 42.23 MEGGSWMVLENDAFYVPTLSSSVGLKPSEDYTAIELVGTDRPGLLSEVSAVLTDLGCNVVNAEIWTHNARAAAVVHVTDEKTRCAAEDPKRLLTIKKLLCNVLKGNNDLKTAKRTLSAPGYMHRQRRLHQIMFAEWDYEKIERAEQEDRLRPQVTVLDCVEKDYTEYVVFHGVVI 175
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo25g01491 175 Gene3D - 28 102 - -
Chmo25g01491 175 ProSiteProfiles ACT domain profile. 33 117 IPR002912 -
Chmo25g01491 175 SUPERFAMILY ACT-like 28 85 IPR045865 -
Chmo25g01491 175 CDD ACT-ACR-2 32 105 - -
Chmo25g01491 175 Pfam ACT domain 33 81 IPR002912 -
Chmo25g01491 175 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 24 165 IPR040217 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo25g01491 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr25:125746083 Chmo26g01617 Chmo-Chr26:135196994 dispersed
Chmo Chmo-Chr25:125710191 Chmo25g01491 Chmo-Chr25:125746083 proximal
Chmo Chmo-Chr25:125746083 Chmo25g01494 Chmo-Chr25:125793872 proximal
Chmo Chmo-Chr25:125746083 Chmo27g01452 Chmo-Chr27:113003478 wgd