AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo25g01535 ATGGAAGACAGCTTCAAAGTCCGAATAGACAAAACATTCGGCACCCTCTCACCCCAACAACAATCCTCCCTCTGGTCCTTAACAGACGAAGAAATCCAACACAACAAATGGATCCAACCTAAACCCAAACCCCAAAACGATGATCTTCTCAAAAACCCAAAAAAACCATTTTCACCATTCCTTCAAAGCCTTATTGACCAACCCTCATCTTCTGCTGATTTGCAGGCTGATATTCAGGAACTTGACACTGATGAAGATGATGATAGTGATGATGATGGTGATAAGAGGGATAAGGGGGAGATGGGTTTTGTTAAACCGGATGACCATAATAGTGAAGAGTGGGATATTCGCGCTTCTGTTGGTTTGGACTGCACTCTTGACAATGAGGAAGAGGAGGATTGTTTTGACAAGGTTGCCGTAGGCAAGGAAGAATCCGCAGAACGCTTTTACATGAAAGATGTCAATGATTATGAAGTTGAAATGGATTCTAACATTGCGCTTCCTGGCTCGTTAACTGATGTAATCAAGGATCCCCGAGCAAATCACAAGGCAGCAAAACTAAGGATCAAAGAAGACTATGAATCCGCTAAAAAATTAGGAGCATGTAATGTTCCAGATCATGTTCTTAACCCTTCAAGATACACACACTATACATTTGATTCAGATGAAGAAGTTGATGAAGAGTCTAATCGAAAAGCCTGTATGGATTTCCTAAATACATTGAAGGGGTCTGCTGCCATGGAGATACAAGAAGATGTTTCTGCTGATTCCTTAAAGTCGATCGTCTTTACTCCAAAAAAGAAGTCTGGTGACGGTTTGATGACAAAAGGCAAGGTGGATGGAAATGACGAAAACGTGCATAAGAAATTTGTTTCCGTTAGTATTGAGGATAGCGAGGTTTGCATGATGGATGAAGATGAGCCTGTGATCAATAAAGGTAGCAGCTTGCAGAAAGGTACTCGCAGATATCGAACAAAGGCCAGTATTGATGAATGA 996 41.37 MEDSFKVRIDKTFGTLSPQQQSSLWSLTDEEIQHNKWIQPKPKPQNDDLLKNPKKPFSPFLQSLIDQPSSSADLQADIQELDTDEDDDSDDDGDKRDKGEMGFVKPDDHNSEEWDIRASVGLDCTLDNEEEEDCFDKVAVGKEESAERFYMKDVNDYEVEMDSNIALPGSLTDVIKDPRANHKAAKLRIKEDYESAKKLGACNVPDHVLNPSRYTHYTFDSDEEVDEESNRKACMDFLNTLKGSAAMEIQEDVSADSLKSIVFTPKKKSGDGLMTKGKVDGNDENVHKKFVSVSIEDSEVCMMDEDEPVINKGSSLQKGTRRYRTKASIDE 331
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo25g01535 331 MobiDBLite consensus disorder prediction 13 33 - -
Chmo25g01535 331 Pfam Tumour suppressing sub-chromosomal transferable candidate 4 196 252 IPR029338 -
Chmo25g01535 331 MobiDBLite consensus disorder prediction 1 114 - -
Chmo25g01535 331 MobiDBLite consensus disorder prediction 62 77 - -
Chmo25g01535 331 MobiDBLite consensus disorder prediction 78 93 - -
Chmo25g01535 331 PANTHER TUMOR SUPPRESSING SUBTRANSFERABLE CANDIDATE 4 TSSC4 1 199 IPR029338 -
Chmo25g01535 331 MobiDBLite consensus disorder prediction 94 114 - -
Chmo25g01535 331 MobiDBLite consensus disorder prediction 310 331 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo25g01535 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr10:308139603 Chmo25g01535 Chmo-Chr25:128015939 dispersed
Chmo Chmo-Chr11:262031926 Chmo25g01535 Chmo-Chr25:128015939 dispersed
Chmo Chmo-Chr12:315365142 Chmo25g01535 Chmo-Chr25:128015939 wgd