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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo25g01537 ATGTTGCGAGCCGGAAGCCGGAGATTAGCAGCCTCCCTTACATCTCCATGGAGGCAAACAACCTCTTCCTCCTCCGTCATCTCCCCTCATATTACTCAGATCTCCGACGACAACACCGCCGCCGCCGACAATGATGTCCGATCGATCTACCGCTCCAATCTCATTTCCAGAGGGTTTGCCTCGAATTCGATCACCCCAAATTTTGAGGACAGAGTTCCACCAACAATAGCAGCCATCACGAACCCTACTTCCAAAATTGTCTATGATCAGTACAATCACGAGCGTTACCCACCTGGTGACCCAAGCAAGCGAGCATTTGCCTATTTTGTCTTGACAGGTGGCAGGTTTGTGTATGCTTCCCTGATTAGGCTTTTGGTCCTCAAATTTGTTCTCAGCATGTCCGCCAGTAAAGACGTTCTTGCCCTTGCCTCTCTTGAGGTTGATCTTGCTAGCATTGAGCCTGGAACCACCGTGACAGTTAAGTGGCGTGGAAAGCCCGTTTTTATCAGGCGCCGGACAGATGATGATGTGAAGTTGGCTAACAGTGTTGATGTTGCATCTCTTCGGGATCCACAAGAGGATGCTGCTAGGGTGAAGAACCCTGAATGGCTTATTGTGGTTGGTGTATGCACCCATCTGGGTTGCATCCCACTACCGAATGCTGGTGATTTTGGTGGGTGGTTTTGCCCTTGTCACGGTTCTCATTATGACATTTCTGGCAGGATCCGTAAGGGCCCAGCACCTTACAACTTGGAGGTCCCAACTTACAGTTTCTTGGAAGACAACAAGTTGCTCATCGGATGA 804 49.88 MLRAGSRRLAASLTSPWRQTTSSSSVISPHITQISDDNTAAADNDVRSIYRSNLISRGFASNSITPNFEDRVPPTIAAITNPTSKIVYDQYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLASIEPGTTVTVKWRGKPVFIRRRTDDDVKLANSVDVASLRDPQEDAARVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEDNKLLIG 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo25g01537 267 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 177 265 IPR017941 GO:0051537(InterPro)
Chmo25g01537 267 SUPERFAMILY ISP transmembrane anchor 79 140 - -
Chmo25g01537 267 Gene3D - 136 267 IPR036922 GO:0051537(InterPro)
Chmo25g01537 267 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 137 267 - -
Chmo25g01537 267 CDD Rieske-cytochrome-bc1 144 267 - -
Chmo25g01537 267 PRINTS Rieske 2Fe-2S subunit signature 205 216 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chmo25g01537 267 PRINTS Rieske 2Fe-2S subunit signature 227 239 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chmo25g01537 267 PRINTS Rieske 2Fe-2S subunit signature 239 251 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chmo25g01537 267 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 71 267 IPR014349 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Chmo25g01537 267 Pfam Rieske [2Fe-2S] domain 197 252 IPR017941 GO:0051537(InterPro)
Chmo25g01537 267 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 123 267 IPR006317 GO:0008121(InterPro)
Chmo25g01537 267 Pfam Ubiquinol cytochrome reductase transmembrane region 100 138 IPR004192 GO:0008121(InterPro)
Chmo25g01537 267 SUPERFAMILY ISP domain 129 266 IPR036922 GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo25g01537 K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
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Event-related genes

Select Gene_1 Gene_2 Event_name
221575 Chmo25g01537 Chmo26g01661
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr25:128056248 Chmo25g02667 Chmo-Chr25:182678378 dispersed
Chmo Chmo-Chr25:128056248 Chmo26g01661 Chmo-Chr26:136868537 wgd
Chmo Chmo-Chr25:128056248 Chmo26g02615 Chmo-Chr26:180526074 wgd