AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo25g01539 ATGGCGGCGGATCAGCTGAATAAGCGTTCTAAAGGAAGCAACGTTACCCATCACACTTCTTGGGAGCTGCAGAAAACGAAGAAGGCAAAATTTTCTCATTATGAGTTAAATACAAGATCAAGTATTTCTCTCGAGTGGGATGACAAGAAGAAACATGTTGTTCCAAAGAAGGAGCAGATAAGTATTGCTCGTAGAGAGTTGACACCGTTTCTTCCTCATGTTCCACATCACCAGAATGTCTTGGGTGATGTCTTTGCAGCTCCTTCTGAGCTATTTGAACTGAATGACTTGACTGGTTTGCTGTCGTATGAGGTTTGGCAAACTCAATTGTCTGTACAAGAAAGAGAGTTTCTGACCCAGTTTCTTCCAGAAGGAGCTGACCCACATACCGTTGTTGATGACTTGTTATCTGGGAGCAATTTTTGCTTTGGAAGTTCATTCCAAAAATGGGGTACTTCAGTTTGTTCCGGTGATTGTCATCCTGATGCTGTTCTTCGTCAAGAACAGTGTAACAAGGCTAACAAAATAGCATATTATAAGGAATTGCAAGAGTATCATACCAAAATGATAGGGAGTCTGCAATTGTGGAAGGAAACATGGGCATGCTGTGTGAATCTGGAAAATGACTTTAGCCAACAGATACCGAGGCCCATGAATGAATATGACAAAAATGGCTCCTCACATCAGAAAGACATACATGGTAGTCCTGAAGATGATGTGGGTGCAACATCTGATTCTGGTTATTTCGATGCTGAAGATAAGTCATATAGTAGCAATAGCCCGGATGTAGCAGTCATGAACGGAAAAACTTCAACAAGGGTCTCGAAAATGGAATCAGAGAACAATTATTTTGACTCTTCAGTTGGATCGAAATCGGTAGCAAGATCTAGAAAAGGAGATAAATTACGCAGGCTCAGTGTAGAGTGTGGTGATGGTGCCAAATATATGTCATATATCAAGGTTAGCAAAGTTCAGCATGAACAAGTTAAAAGCAGTATGAAACACTCTAACACCGGTATCCAACAGAGGTCTCTGAGTCACGTTTTAGGCAATCTTGATAGTTTCTGTGTTATACCATATGAAGTGTTTGAAGAAGAAGAGAGACTGAAGCTGCACGAACACTGGTCTAATTTGGCAAAGAAAGATCTCCCTGCGGGCTTTGCAAATTGGAATAGTTGGCGATCTGCCAGGTGGCAGTTAGGAATATCGTTAAGGAAAGAAATGGAAGATAGAGTGAAGTCAAATGATCAACCAGTTTCAAGTTTTTGTAATCAGGATGAGGAGTTAAAATATGGTGATGTTCAGGACAACATGGAACAAAACGGCGATGCAGTGCTCCATTCAGAGGCGAATCTTAATGCAGAAAACCATGAAACAGCAATGGAAGTTGAACCAAATGATCAGCTTAATCAATGCTCGCGTCAGAATCAGCATCTACCACAGATTAATGTAATACATAATGATGGCCAAAACTTCTGCTCCATGCCCATGGATGCTGCCAATGATGATGTATTGATCCAGTCAAGTGCTTTTCCTTCTAGTCTATGTGAATATCCCGCAAGTATAAATCGTGCAGATGCATCAGTTGGTGAACAAATATGGCCTGAAGTTAGCTTACCACAAAGTGTATACTATCACCATCCGACATCTTTAAGTGTAAGCAATGGATACGCTTCTGTTGGTGAATTGTCACTAGGCCAGTCGAGGCAACCAATTGTTCTAGAATCCGAGTTACTACAAAAGGATCCTCTTAGAAGTTTTATGCACAAAGGATCTGATGGTGGTGATTCTTTCTTTAATCCATATGCTAATCAAGACCGTAACGAATTACTACTCCAATCACTTTATAAAGATCCCGGGAATTCTCATTATCTTCATGAACAGAAGCTTTCTAGTTTATCTTTCCACCCAACCGCGAGTGACCCGATGCTGGGAACCAATCAATTTCCTAGAAATTTGTGCCCATCGATGCTAATGGATCCTGTGCTTCCGACCCTTCAAGAAAACTTATATTCAATTCCAAGGCAAGAACACTTGTTGCCAATGAATAACGTTCATGATTGGCCCGGGAATAGTGGTATTAACCTTCCCATGACATCATCATCCCATCATCGCTTAAATCAAAATTGGTATCATGCTGATGAGGTGGTGCACAATGGGTGGTCTGGCGGTGTAGTACCGAACCAGGACCTTCTGAATAGTGCTCAGGTAGTTGATGAGAGCTTATTTAGCGTTTTAGCTCAGCATAATGGGGCCCATATTGGTTCAACCGGTGCAATGCAACAGTTTATTCCTTCTGGGAATTATGTCGGAGTTGGGGTTGGGCTTGGTGCAGTTGCGCCTACATTTACTGCTGTACCTCCTCGGACCGGCACAGGGTCAGGTTTCAACTACATGAGTAGCAATGAAGCACAGTTAGGATGGATGAACTTGCCGCATGCATTGCAGGGGACCGGTAAATCATTTCCAAGACTATGGTATGACAAAGATATAGGACGGTGA 2502 42.05 MAADQLNKRSKGSNVTHHTSWELQKTKKAKFSHYELNTRSSISLEWDDKKKHVVPKKEQISIARRELTPFLPHVPHHQNVLGDVFAAPSELFELNDLTGLLSYEVWQTQLSVQEREFLTQFLPEGADPHTVVDDLLSGSNFCFGSSFQKWGTSVCSGDCHPDAVLRQEQCNKANKIAYYKELQEYHTKMIGSLQLWKETWACCVNLENDFSQQIPRPMNEYDKNGSSHQKDIHGSPEDDVGATSDSGYFDAEDKSYSSNSPDVAVMNGKTSTRVSKMESENNYFDSSVGSKSVARSRKGDKLRRLSVECGDGAKYMSYIKVSKVQHEQVKSSMKHSNTGIQQRSLSHVLGNLDSFCVIPYEVFEEEERLKLHEHWSNLAKKDLPAGFANWNSWRSARWQLGISLRKEMEDRVKSNDQPVSSFCNQDEELKYGDVQDNMEQNGDAVLHSEANLNAENHETAMEVEPNDQLNQCSRQNQHLPQINVIHNDGQNFCSMPMDAANDDVLIQSSAFPSSLCEYPASINRADASVGEQIWPEVSLPQSVYYHHPTSLSVSNGYASVGELSLGQSRQPIVLESELLQKDPLRSFMHKGSDGGDSFFNPYANQDRNELLLQSLYKDPGNSHYLHEQKLSSLSFHPTASDPMLGTNQFPRNLCPSMLMDPVLPTLQENLYSIPRQEHLLPMNNVHDWPGNSGINLPMTSSSHHRLNQNWYHADEVVHNGWSGGVVPNQDLLNSAQVVDESLFSVLAQHNGAHIGSTGAMQQFIPSGNYVGVGVGLGAVAPTFTAVPPRTGTGSGFNYMSSNEAQLGWMNLPHALQGTGKSFPRLWYDKDIGR 833
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo25g01539 833 PANTHER NFRKB-RELATED 1 457 IPR024867 GO:0031011(InterPro)
Chmo25g01539 833 MobiDBLite consensus disorder prediction 250 266 - -
Chmo25g01539 833 MobiDBLite consensus disorder prediction 223 238 - -
Chmo25g01539 833 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 88 199 IPR044867 -
Chmo25g01539 833 CDD DEUBAD-NFRKB 90 196 - -
Chmo25g01539 833 MobiDBLite consensus disorder prediction 214 266 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo25g01539 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
221577 Chmo25g01539 Chmo26g01663
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr25:128097106 Chmo26g01663 Chmo-Chr26:136897000 wgd