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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo26g01593 ATGCTAACAAGAGAAGAGTTGATTCATTTATTTGATCGATTCTCTGATCTCATTTCTCAGCCTGATGTGAAGAAACGAATTGCAGATGCTGTTAATGATAATCAGGAAGCTGTAGCTGTGACTACCGCTATCCAGGGGGAAATACTTATGGAGATGGGAGTAGATCCAGCTGATGGCCTGGCTTGCTTGGGGAAAGTAAACGTGGAGTACGAAAATGATCAGGATTTGATGGTTCGCTTTTATGAATTTGTAGCAAAGGAAGAGATGGCATGTGAAGAAGCAGAACTCGGGCCAGATGAATACTCTAAGAGATTGCAAATGCAGGAGAACTTGCATCAACAGCAATTGGAGATGTTGAAACACATGCGTAATTATGGTGTAGAAGATCAGTCTGCTATCTTAGAGAAGCTGCGACAGCAAATGGAGAAAGAAGAATTTGAAACTGAGACATCACTATTGTCGGTAGAGGAGATCCAGAACATTGTTCAAAATGGAGCATAG 501 41.52 MLTREELIHLFDRFSDLISQPDVKKRIADAVNDNQEAVAVTTAIQGEILMEMGVDPADGLACLGKVNVEYENDQDLMVRFYEFVAKEEMACEEAELGPDEYSKRLQMQENLHQQQLEMLKHMRNYGVEDQSAILEKLRQQMEKEEFETETSLLSVEEIQNIVQNGA 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo26g01593 166 PANTHER EXPRESSED PROTEIN 1 164 - -
Chmo26g01593 166 Coils Coil 127 147 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo26g01593 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
221547 Chmo25g01466 Chmo26g01593
233400 Chmo27g01428 Chmo26g01593
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr26:133252172 Chmo4g03229 Chmo-Chr4:215821158 dispersed
Chmo Chmo-Chr25:122263287 Chmo26g01593 Chmo-Chr26:133252172 wgd
Chmo Chmo-Chr26:133252172 Chmo27g01428 Chmo-Chr27:110995808 wgd