AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo26g01615 ATGGGTTCCGAAATAACAGAACCATTCCTAACAGACTCATCATCTGAACAACCCAAACAACCAGACAATGATGATCTAGAATCCATACCAGAATGGAAAGATCAGATCACACTAAGAGGACTGATAGTCAGTGCTTTGTTAGGGACTTTGTTTTGTATCATAACTCATAAGCTGAATTTAACAGTGGGGATTATCCCTTCGTTGAATGTAGCGGCAGGGTTGTTGGGGTTCTTTTTTGTCAAGTCGTGGACTAGTGTTGTGGAGAGGTTTGGTGTTGTTGTTAAGCCGTTTACGAGGCAGGAGAATACTGTTATTCAGACTTGTGTTGTTGCTTGTTATGGCCTTGCTTTTAGTGGTGGATTTGGGTCATATTTGCTTTCAATGGATGAGAGAACATACAATTTGATTGGTGCGGACTACCCGGGTAACCGGGCTGAGGATGTTAAGAACCCGGGGCTATTGTGGATGATGGGTTTCATTTTTGTCGTCAGTTTTCTTGGCCTTTTTAGTCTTGTTCCACTTCGCAAGGTCATGGTAATGGATTATAAGCTTACATACCCTAGTGGAACTGCCACTGCAATGCTGATCAATAGTTTTCACACTACCACTGGTGCAGAGCTTGCAAGGAAACAAGTAAACTGTCTTGGAAAGTATTTGAGCATAAGTTTTGTCTGGAGTTGCTTTAAGTGGTTTTTCAGTGGTGTTGGGGATGCTTGTGGTTTTGACAATTTTCCGAGTTTTGGCTTGATGTTGTACAACAACACATTCTACTTTGACTTCAGTCCAACTTATGTCGGATGTGGTCTTATCTGCCCTCACATAGTCAACTGTTCGGTTCTTTTTGGAGCTATTGTATCATGGGGTTTTCTTTGGCCACTGATTACTACATATGCAGGAGATTGGTATCCAGCTGATCTTGGCAGCAATGACTTCAAAGGTCTCTATGGCTATAAGGTCTTTATATCCATTGCCCTTATTCTTGGAGATGGTCTTTACAATCTGGTTAAGATAATATTCATCTCCCTTAAGGCGTTGTTGAACAGCCGCACTAAGCAACAAAATCTTCCTGTAACACACGAGATTCTAGATGCGGAGACAACTCAACTACAACTCGAAGAAAAAAAACGAGACACCGTTTTCTTAAAAGACAATATACCAACATGGGTTGCAGCATCCGGATACATAGCCTTAGTAGGAATATCCATGGCTACAATGCCACTCATATTCCCACCGCTAAAATGGTACCTCGTCCTATGCTCATACATTATCGCACCTGCATTAGCTTTTTGCAACTCATACGGAACTGGTCTCACTGATTGGAGTCTAGCTTCAACATATGGCAAAATCGGTCTATTCATCATAGCATCATTAGTCGGAAGCGATGGTGGGGTCATAGCTGGTTTAGCTGCATGTGGGGTCATGATGTCAATTGTTTCAACCGCTGCTGATTTAATGCAAGATTTCAAAACTGGCTACCTTACATTATCGTCAGCAAAATCCATGTTTGTGAGTCAGTTAGTCGGAACAGCTATGGGATGCATCATTGCACCACTCACGTTTTGGATGTTTTGGAGCGCGTTCGAAATCGGGACTCCCGATAGTCCTTACAAGGCGCCGTACGCTGTCATATACCGTGAAATGGCTATCCTTGGTGTCGAGGGGTTCTCCGAGCTCCCCAAACATTGTTTGGCTTTATGTTGTGGGTTCTTTGTGGCAGCACTGGTCTTAAATCTTTTGCGAGATTTTACTCCCAAAAAGGTGTCTCAGTTCATACCTATTCCAATGGCAATGGCAGTTCCATTCTATATTGGGGCGTATTTTGCGATCGATATGTTTATCGGAACAGTGATACTCTTTGTGTGGGAGCGAGTGAACAAGAAAGATGCGGAAGATTATGCAGGAGCAGTTGCTTCAGGCTTAATATGTGGGGACGGGATATGGACCATCCCATCAGCTATACTCTCGATTCTAAGGGTTGATCCACCAATCTGCATGTACTTCGGACCGTCTGTGAGTTCCTGA 2022 43.18 MGSEITEPFLTDSSSEQPKQPDNDDLESIPEWKDQITLRGLIVSALLGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFFVKSWTSVVERFGVVVKPFTRQENTVIQTCVVACYGLAFSGGFGSYLLSMDERTYNLIGADYPGNRAEDVKNPGLLWMMGFIFVVSFLGLFSLVPLRKVMVMDYKLTYPSGTATAMLINSFHTTTGAELARKQVNCLGKYLSISFVWSCFKWFFSGVGDACGFDNFPSFGLMLYNNTFYFDFSPTYVGCGLICPHIVNCSVLFGAIVSWGFLWPLITTYAGDWYPADLGSNDFKGLYGYKVFISIALILGDGLYNLVKIIFISLKALLNSRTKQQNLPVTHEILDAETTQLQLEEKKRDTVFLKDNIPTWVAASGYIALVGISMATMPLIFPPLKWYLVLCSYIIAPALAFCNSYGTGLTDWSLASTYGKIGLFIIASLVGSDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCIIAPLTFWMFWSAFEIGTPDSPYKAPYAVIYREMAILGVEGFSELPKHCLALCCGFFVAALVLNLLRDFTPKKVSQFIPIPMAMAVPFYIGAYFAIDMFIGTVILFVWERVNKKDAEDYAGAVASGLICGDGIWTIPSAILSILRVDPPICMYFGPSVSS 673
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo26g01615 673 MobiDBLite consensus disorder prediction 1 17 - -
Chmo26g01615 673 Pfam OPT oligopeptide transporter protein 35 654 IPR004813 GO:0035673(InterPro)
Chmo26g01615 673 MobiDBLite consensus disorder prediction 1 27 - -
Chmo26g01615 673 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 16 669 IPR045035 GO:0016020(PANTHER)|GO:0035673(InterPro)
Chmo26g01615 673 NCBIfam OPT family oligopeptide transporter 34 651 IPR004813 GO:0035673(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo26g01615 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr26:134995967 Chmo27g02517 Chmo-Chr27:164639422 dispersed
Chmo Chmo-Chr25:125683958 Chmo26g01615 Chmo-Chr26:134995967 wgd
Chmo Chmo-Chr26:134995967 Chmo27g01448 Chmo-Chr27:112682180 wgd
Chmo Chmo-Chr26:134995967 Chmo4g02139 Chmo-Chr4:145539146 wgd
Chmo Chmo-Chr26:134995967 Chmo5g02012 Chmo-Chr5:144010402 wgd
Chmo Chmo-Chr26:134995967 Chmo6g01621 Chmo-Chr6:126259504 wgd