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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo26g01620 ATGGAATCACCAACCCTTTTCTTTGTCTTGTCTTTGCTAGTGACATTTTCAATGTCTGTCAAAGTTAATGGTTCAAAACACTCTATTTCGAGTATAACAGTAGTTGGTGTTGTCTACTGTGATGTATGCTCCAACAACTCTTTCTCCGCCCACAGCTACTTCTTACCAGGGGCGGAGGTAAAGATAGATTGTAGGTTTAAATTAGCATCTCCAAGAACTGCAGAGCAAATATCTTTTTCGGCCAACAGGACTACCAACAGAAATGGAGTGTACAAGATGGACATACCTTCTGTTGATGGGATTAACTGTGCAAAAGAAGCACAATTTCTCAACACATGCAGAGCTAGCTTGATCAGAAGCACGTCTCCTGCATGCAATGTGCCTGCTTTCGTAAGCACTTCTAGTGAGTTCTCTGTGAAATCAAAAGAAGCCAATCTGTGTATCTACAGCCTGTATGCCTTGAGTTTTAAACCATCTAAAAAAGATCTTGCATTATGTGGGAAGTAG 507 40.83 MESPTLFFVLSLLVTFSMSVKVNGSKHSISSITVVGVVYCDVCSNNSFSAHSYFLPGAEVKIDCRFKLASPRTAEQISFSANRTTNRNGVYKMDIPSVDGINCAKEAQFLNTCRASLIRSTSPACNVPAFVSTSSEFSVKSKEANLCIYSLYALSFKPSKKDLALCGK 168
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo26g01620 168 PANTHER OS09G0508200 PROTEIN 4 168 - -
Chmo26g01620 168 Pfam Pollen protein Ole e 1 like 34 132 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo26g01620 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
56582 Chmo26g01620 Chmo4g02133
56583 Chmo26g01620 Chmo5g02005
56584 Chmo26g01620 Chmo6g01615
221557 Chmo25g01496 Chmo26g01620
233409 Chmo27g01461 Chmo26g01620
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr12:313811418 Chmo26g01620 Chmo-Chr26:135335434 wgd
Chmo Chmo-Chr25:125849098 Chmo26g01620 Chmo-Chr26:135335434 wgd
Chmo Chmo-Chr26:135335434 Chmo27g01461 Chmo-Chr27:113414807 wgd
Chmo Chmo-Chr26:135335434 Chmo4g02133 Chmo-Chr4:145066054 wgd
Chmo Chmo-Chr26:135335434 Chmo5g02005 Chmo-Chr5:143676161 wgd
Chmo Chmo-Chr26:135335434 Chmo6g01615 Chmo-Chr6:125437717 wgd