AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo26g01630 ATGGGGTGTGCGGTTTCTGTTTATAGAGTTGGAGGCAATAAGAAGCAACTGAAGATCCCTCTAGTTACTGTACTTGTTCCTTCTATTCGTATTCCGACCGCCTCCAATATTCAAAAGCCTCTTAAAGGACTTGTTCCTAAGGATCTTGCTGATCGTCTGACTTCTTTACGTAACCAAATCTTTCTTCTGGCCGAGCAAACTGATGTTTCAGCTGTTCCTGAATTGTTACGCGCATTGGAGGAATACATGTCACTATTAGTTGGCCTCACTGATCCAGAACTTGGGTGTCGAGAACTGATTGAATTCAAATGGAAGAGTCTAGACGATGGACAAAAAGAAATATGCATTGCTGATTCGTGGTTTGAATTGCTATCGGTTGTTCATATGATGGCTATGTTGACATTAATGGAGGCAAATTCAAAATTGATACCTGATCAAACTGTTTCAAGATACTTACAATTCTGTCTTCGTGAAATTCTAGTCCAAATTCCACCTCATATTAAGATGAAGCTGCCTGTAGATTTGCAGGAGAGTGTAATCGAGGCTGCTTATATTCAAGCACTGGGGCAGGGAACAGAAATGCAGCTTGCTTCAGCTGTTGGAAGTAAAAATGCCACTTTATCTGTTAAAAGAAGATTAGCATGCGAGCAACTAAGATATTTCAGCCAGGCTCATTACTGCTTGTCGACATGTGACAACCTTAACGGATATGGAAAGAAGCATCTGTCATTTATCAAATGGAAGTACCTTGAAGCAAAGGCTGCAGCCTACTATTATCATGGTCTGATCACGGACAAAGGTACCGAACCATCATGCCATATTAGTGCAGTGTGCTGTTTTCTAGCAGCTGAAGAGATTCTAAAAGAGAGCAAGAAGGCTTGTTTAAACTTTTGCCTAACGCTTCCTATAACAAGGGCTCCTGCTGCATGGGGTGCCATGAAGCATTTGAATAAGAAAATTCCTGAAACCGCAGCTAAAAAGTCTCAAATGTACGCGTACCTTCTAGAGGAAGAAAAGAGTTTGGACGTGCTGCCCGACCTACCTGAGTTTGAGTTATCATTAAAAGCAGACGAGTATCAAATGCCCAATAAAGATGCAGCATGGGAGAGTGAAAAATGGGTTATACCTAATCAGACGCTTAAAACTCACTTAACCGACGACGAAGAAGATGATTAG 1176 41.41 MGCAVSVYRVGGNKKQLKIPLVTVLVPSIRIPTASNIQKPLKGLVPKDLADRLTSLRNQIFLLAEQTDVSAVPELLRALEEYMSLLVGLTDPELGCRELIEFKWKSLDDGQKEICIADSWFELLSVVHMMAMLTLMEANSKLIPDQTVSRYLQFCLREILVQIPPHIKMKLPVDLQESVIEAAYIQALGQGTEMQLASAVGSKNATLSVKRRLACEQLRYFSQAHYCLSTCDNLNGYGKKHLSFIKWKYLEAKAAAYYYHGLITDKGTEPSCHISAVCCFLAAEEILKESKKACLNFCLTLPITRAPAAWGAMKHLNKKIPETAAKKSQMYAYLLEEEKSLDVLPDLPEFELSLKADEYQMPNKDAAWESEKWVIPNQTLKTHLTDDEEDD 391
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo26g01630 391 CDD BRO1-Alix-like 10 355 - -
Chmo26g01630 391 Gene3D alix-aip1 like domains 45 375 IPR038499 -
Chmo26g01630 391 PANTHER UNCHARACTERIZED 14 381 IPR038898 -
Chmo26g01630 391 SMART BRO1-2 23 380 IPR004328 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo26g01630 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr26:135489383 Chmo8g00985 Chmo-Chr8:58765158 dispersed
Chmo Chmo-Chr26:135489383 Chmo26g01631 Chmo-Chr26:135528860 tandem
Chmo Chmo-Chr25:126457105 Chmo26g01630 Chmo-Chr26:135489383 wgd
Chmo Chmo-Chr26:135489383 Chmo27g01472 Chmo-Chr27:113829174 wgd