AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo26g01667 ATGGAGTTGCAGAGTCAAGTAGCACAGGCGGTGCACGTGCTGAACCACGATACGCAATCGTGTAACCGAGTATCAGCTAATCAATGGTTAGTTGAGTTTCAACAAACAAATGCTGCTTGGGAGATTGCTACTTGTATATTGACGTCATCTGATAATAAGCAGTTTGTTTCCGATTTCGAAGTTGAATTCTTCGCTGCTCAGCTTCTTAAACGAAAGATCCAAAATGAAGGACATTGTCTCCAGCTGGAAGCAAAAGAATCTCTTGTTAATGCTCTCCTTTTGGCTGCTAAAAGATTTAGTTTAGGCCCATCCCAGCTCTTAACACAGATTTGTCTGGCTCTATGCATGCTCATACTTCATGCGGTGGAGTACTACAAACCAATAGAGAAGCTCTTTTACAGTCTTCAGACCCTGCAAGGTCAAGATGATGGCAGTATCGTTGTTTTGGAAATGCTCACGGTCTTGCCAGAAGTCGTTGAAGATGAATGTGCTAATTATAGAACCAAGTCCGGTCAAAGAATTGACTATGGCCCAGAGCTACTCTCACATACATCCGCAGTGCTAGAGTTCCTAAAGCAGCAATCCGAAGAAAGCTTTAATGGTGCCATTCAACTACATGAACGGAGCAGAAAGATACTGCGCTGTTTGTTAAGTTGGGTTCGAGCAGGATGTTTCTCGGAAATTTTGCCAGTTTCGTTATTAGCCCATCCGCTTCTTAATTTTGTTTTCAATTCTTTGCAGGTTTCATCCTCATTTGATCTGGCAATTGAGGTTTTAATTGAGCTCGTTGGCCGACATGAGGGTTTACCACAAGTTCTTCTCAGCAAAGTAGGATTTCTTAAAGACGTTCTTCTTCGAGCATTCAATAGTGGAAATGAAAAAGTAATTAGCGGTCTTGCATGCTTGATGTCTGAGATTGGTCAGGCTGCTCCATATTTGATCATAGAAGCCCATTCAGAAGCACTTATACTGGTGGATGCACTTTTGAGCTGTGTATCATTTCCAAGTCAAGATTGGGAGATTGCAGACTCAACTTTGCAGTTCTGGTGTAGTCTTGCAAGCAATATTGTCCGAATGGATGATGAGAATACAGAGAATAGCAAACATGTCAAAGATGTTTTTTCACCAGTATTTTCAGCATTGCTTGATGCTCTTTTGATGCGTTCTCAGGTGGATGATTCAACATATACAAATGAGACTGCACCAAGGGACTTGCCAGATGGCCTTGCTCAGTTTAGGTTAAATCTAGTGGAGCTTATGGTGGACATTTGCCAGCTTTTAAAGTCTGCTGTGTTTTTGCAAAAGATTTTTTTTGGTGGTTGGTTGTCTTCAAATGTACAAATTCCTTGGAAGGAGGTGGAAACCAGAATGTCTGCTCTTAACGTGGTTGCTGATGTAGTACTGCATGAAGGTCAAACATTTGATCTCTCAATGGTCTTGCACTTGGTCACAGTTTTGTGTGATCATGCATCATATGAACCGAAAGGCTTTATGTGCATTGTACATAAATCACTTGCAGACGTTATTGGTTCGTATTCGAAGTGGATGTCTTCTTACGTAACTAATGCCAGGCCATTGCTTTTATTTTTTGCAGCTGGTATGTCAGAGCCTTTATGCTCACATGCTTGTGCAACTGCCTTCAGGAAGATCTGTGAAGATGCTACCGAAGTTATGCACGAACCTTCAAGTTTAGAAATGCTAATGTGGATTGGAGAGGGATTGGAAAAGAGACAGTTACCTCTGGAAGACGAGGAAGATATTATTAGTGCTATTACTTTGATACTTGGAAGCCTTGCGAACTTGGAATTAAGAAACAATCTGTTGCTTAAGTTGCTTTCTCCTAGTTGTGGATCTATCGGGAAACTTCTTGATGGAGATCATGTCCAGTCTTTGAGGCAACTACCAAGTGCTTATACTCATCTTGTCAACTCTGCAACGAGGGGTTTCTTCAGGATAGGAGCTGTATTCAGTCATCTTGTAATGGCACCCACTACATGTCATGATATAGACAATTCTATGATAGTCGTTCTTGAAAGTTTTTGGCCTCTGCTTGAAAAATTCTTTCAGTCAGAGCACATTGAGAATGCAAGTTTATCCGTGGCTGCATGCAGGGCTCTCTCACAAGCAATTAAGTCTGCAGGCCATCATTTTGTTACACTGTTGCCAAAAGTTTTGGATTACCTATCAACAAGTTTTGTTTCATTTCAAACTCATGAGTGCTACCTTAAAACAGCTTCTGTTGTGGTTGAAGAATTTGGTAATAAGGAGGAATATGGACCTCTATTTATCAGCACGCTTGAAAGATTTACAAATGCATCATCAGTAATGTCTCTAAATTCTTCATATGTGTGTGATCAAGAGCCCGATCTTGTTGAGGCATATTGCAGTTTTACATCAATATTTCTTCACAGTTCGTCAAAGGAAGTAGTAGCTTCTTCTGGTCCTCTTCTAGAAGTTTCCTTTCAGAAAGCAGCTATTTGTTGTACAGCTATGCATCGTGGAGCAGCACTTGCTGCAATGTCGTATATGTCTTGTTTTCTAGAGTTTTGCATGACTTCATTGCTGGAATCAGCCACTTGTAACTCTGAATTAAATGTTACATCAATGGCGGTTCATGTAATATCTCACAGTGGTGAGGGACTTGTATCAAATGTGGTATATGCTTTACTTGGTGTTTCGGCAATGTCAAGGGTTCATAAATCTGCAACAATATTGCAGCAGTTGGCAGCAGTATGCAGTTTTAGTGAGAAAACAACGTGGAAGTCTATTCTTTGTTGGGATTCTTTGAATAATTGGCTACATGCTGCGGTACGGAGTCTACCTGGTGAGTACTTGAGACAGGGAGAAGCCGAATCTTTAGCACCGGTATGGCTAAAAGCCTTGGGTGATGCAGCAATTGATTATGTTGAAAGCAGAACGAGCCATGGAGAGAAGAATCATAAACATATGCGGGGAAAAGGTGGCAGGATGCTTAAGTATCTATTTCGTGAATTCGTTGATAGTCATCGTAACATTGTTACATGA 3024 40.97 MELQSQVAQAVHVLNHDTQSCNRVSANQWLVEFQQTNAAWEIATCILTSSDNKQFVSDFEVEFFAAQLLKRKIQNEGHCLQLEAKESLVNALLLAAKRFSLGPSQLLTQICLALCMLILHAVEYYKPIEKLFYSLQTLQGQDDGSIVVLEMLTVLPEVVEDECANYRTKSGQRIDYGPELLSHTSAVLEFLKQQSEESFNGAIQLHERSRKILRCLLSWVRAGCFSEILPVSLLAHPLLNFVFNSLQVSSSFDLAIEVLIELVGRHEGLPQVLLSKVGFLKDVLLRAFNSGNEKVISGLACLMSEIGQAAPYLIIEAHSEALILVDALLSCVSFPSQDWEIADSTLQFWCSLASNIVRMDDENTENSKHVKDVFSPVFSALLDALLMRSQVDDSTYTNETAPRDLPDGLAQFRLNLVELMVDICQLLKSAVFLQKIFFGGWLSSNVQIPWKEVETRMSALNVVADVVLHEGQTFDLSMVLHLVTVLCDHASYEPKGFMCIVHKSLADVIGSYSKWMSSYVTNARPLLLFFAAGMSEPLCSHACATAFRKICEDATEVMHEPSSLEMLMWIGEGLEKRQLPLEDEEDIISAITLILGSLANLELRNNLLLKLLSPSCGSIGKLLDGDHVQSLRQLPSAYTHLVNSATRGFFRIGAVFSHLVMAPTTCHDIDNSMIVVLESFWPLLEKFFQSEHIENASLSVAACRALSQAIKSAGHHFVTLLPKVLDYLSTSFVSFQTHECYLKTASVVVEEFGNKEEYGPLFISTLERFTNASSVMSLNSSYVCDQEPDLVEAYCSFTSIFLHSSSKEVVASSGPLLEVSFQKAAICCTAMHRGAALAAMSYMSCFLEFCMTSLLESATCNSELNVTSMAVHVISHSGEGLVSNVVYALLGVSAMSRVHKSATILQQLAAVCSFSEKTTWKSILCWDSLNNWLHAAVRSLPGEYLRQGEAESLAPVWLKALGDAAIDYVESRTSHGEKNHKHMRGKGGRMLKYLFREFVDSHRNIVT 1007
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo26g01667 1007 Gene3D - 2 956 IPR011989 -
Chmo26g01667 1007 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 5 1003 IPR051345 GO:0005737(PANTHER)|GO:0006606(PANTHER)
Chmo26g01667 1007 Pfam Exportin 1-like protein 104 259 IPR013598 -
Chmo26g01667 1007 SUPERFAMILY ARM repeat 1 851 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo26g01667 K15436 transportin-3
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Event-related genes

Select Gene_1 Gene_2 Event_name
221580 Chmo25g01542 Chmo26g01667
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr6:15252210 Chmo26g01667 Chmo-Chr26:137073910 transposed
Chmo Chmo-Chr25:128207562 Chmo26g01667 Chmo-Chr26:137073910 wgd