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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo27g01204 ATGGAAAACGACTTCGATCGACTTCTCTTCTTCGAACACGCCCGCCGTACTGCCGAACTCACTTACACCAAAAACCCACTCGATACCGAGAATTTAACTAGATGGGCAGGCGCGTTGCTCGAATTATCCACTTTTCAATCTGTTCAGGATTCCAAACTTATGATCAAAGCTGCGATATCGAAATTGGATGAAGCGTTAAAGATTGATCCGAGGAAACATGATACGTTGTGGTGTATGGGAAATGCGCAAACTTCTTATGCTTTTTTGACTCGTGACGAGGACGAAGCTAAGGGTTATTTTGATTCGGCGTATGTTTACTTTCAGCAGGCTGTTGAAGAGGATCCGGGGAACACACTTTACCGCAAGTCATTGGAAGTGGCTGTAAAGGCTCCTGAATTACATGCTGAGCTCCATAAACAGGGATCTATTCAACAAGCTATGGGACCAGTGGCAGGAGGTGGTCCTTCGACCTCTTCTAGTATCAAGGTATCTAGGGCATACACTTCATGGCATGCATGTGGACATATCATAGAGTCGCGGTGA 543 45.67 MENDFDRLLFFEHARRTAELTYTKNPLDTENLTRWAGALLELSTFQSVQDSKLMIKAAISKLDEALKIDPRKHDTLWCMGNAQTSYAFLTRDEDEAKGYFDSAYVYFQQAVEEDPGNTLYRKSLEVAVKAPELHAELHKQGSIQQAMGPVAGGGPSTSSSIKVSRAYTSWHACGHIIESR 180
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo27g01204 180 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 2 160 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Chmo27g01204 180 Pfam Plant specific mitochondrial import receptor subunit TOM20 5 177 - -
Chmo27g01204 180 Gene3D Tetratricopeptide repeat domain 1 147 IPR011990 GO:0005515(InterPro)
Chmo27g01204 180 SUPERFAMILY TPR-like 11 127 IPR011990 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo27g01204 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
56784 Chmo27g01204 Chmo7g02856
56785 Chmo27g01204 Chmo7g03017
56786 Chmo27g01204 Chmo8g02992
56787 Chmo27g01204 Chmo9g03037
221064 Chmo26g01591 Chmo27g01204
230707 Chmo27g01204 Chmo26g01591
246125 Chmo27g01204 Chmo25g01464
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr26:183110536 Chmo27g01204 Chmo-Chr27:98734825 dispersed
Chmo Chmo-Chr27:98734825 Chmo27g02708 Chmo-Chr27:174078317 dispersed
Chmo Chmo-Chr25:122253931 Chmo27g01204 Chmo-Chr27:98734825 wgd
Chmo Chmo-Chr26:133214522 Chmo27g01204 Chmo-Chr27:98734825 wgd
Chmo Chmo-Chr27:98734825 Chmo7g02856 Chmo-Chr7:187022208 wgd
Chmo Chmo-Chr27:98734825 Chmo8g02992 Chmo-Chr8:193099245 wgd
Chmo Chmo-Chr27:98734825 Chmo9g03037 Chmo-Chr9:193985954 wgd